Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas simiae WCS417

 Score = 2104 bits (5451), Expect = 0.0
 Identities = 1053/1403 (75%), Positives = 1206/1403 (85%), Gaps = 4/1403 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MKDLL  LK Q + EEF+ I+IGLASP++IRSWSFGEVKKPETINYRTFKPER+GLFCA+
Sbjct: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEV   KVRRERM HIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSRIGL++DMTLRDIERVLYFES+VVI+PGMT+LE+GQ+L +E Y +ALEE+GD+F+A+M
Sbjct: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEAV ELL AIDLE EI ++REE+P  NSET+ KK++KRLKLMEAF  SGN PEWM+L 
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL+APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+GKLE RGLATTIKAAKKMVERE+ EVWDVL EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            RALMMSTNNILSPANGEP+I PSQDVVLGLYY +RE IN +GEG  F  + EV++ +  G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ 600
             A LHA+VKVRI ET+ D +G      RIVDTTVGRALL Q++P GLS+D+VN  M KK 
Sbjct: 541  EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA 600

Query: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE 660
            ISKL+N CYR +GLK+TVIFADQLMYTGF Y+TISG S+G++D VIP EK  ++  A  E
Sbjct: 601  ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE 660

Query: 661  VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN 720
            V EI+ Q+ SGLVT GE+YNKVID+W+ AN++VSKAMM NLS E VI+R G E  Q SFN
Sbjct: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780
            S+YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI ANFREGL+VLQYFISTHGAR
Sbjct: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLVV E DCGT  GL M P IEGGDVVEPL ERVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL 840

Query: 841  GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG 900
            GRV+A DVF PGTE+V+ P  TL+DE W + +E +SIDEVIVRS I+C+T +G+CA CYG
Sbjct: 841  GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG 900

Query: 901  RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL 960
            RDLARGH +N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASR SA ++VQVKN G+++L
Sbjct: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL 960

Query: 961  HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW 1020
            HN K+V   DG LV VSRS ELAI D+ GRE+ERYK+PYG V+   E   V+AG I+A W
Sbjct: 961  HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW 1020

Query: 1021 DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL 1080
            DPHTHPI+TE+ G++ +V M +G+T+ RQTDELTG+++I +LD   R +AGK++RP +++
Sbjct: 1021 DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM 1080

Query: 1081 VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR 1140
            V  +G DL++PGT+V AQYFLP +A+V + D A+IA+GD +ARIPQE+SKTRDITGGLPR
Sbjct: 1081 VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE 1200
            VADLFEAR+PKE +ILAE+SGTI+FGKETKGKRRLVITP DG + YEE+IPKWR+LNVFE
Sbjct: 1141 VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE 1200

Query: 1201 GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260
            GE+V RGEVI+DGP   HDILRL G+  +A YIVNE+QDVYRLQGVKINDKHIE I+RQM
Sbjct: 1201 GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260

Query: 1261 LRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFI 1320
            LRK  I  +GDS F++G+Q+E++ V + N  L  + K  + F R LLGITKASL+TESFI
Sbjct: 1261 LRKVEIAESGDSSFIKGDQMELTHVLVENERLAAEDKFVSKFTRVLLGITKASLSTESFI 1320

Query: 1321 SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV 1380
            SAASFQETTRVLTEAAV GK D LRGLKENV+VGRLIPAGTG AYH  R   R   D+P+
Sbjct: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERK-RRRDADKPL 1379

Query: 1381 VVNKITASEAEQNLADLLNLAGS 1403
               +++ASE E  L + LN +G+
Sbjct: 1380 ---RVSASEVEAALTEALNSSGN 1399