Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1496 a.a., DNA-directed RNA polymerase subunit beta' from Magnetospirillum magneticum AMB-1

 Score =  843 bits (2178), Expect = 0.0
 Identities = 411/571 (71%), Positives = 491/571 (85%), Gaps = 7/571 (1%)

Query: 1   MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
           M +L+K   Q S T+ F+ I+I +ASP+ IRSWS+GE+KKPETINYRTFKPER+GLFCAR
Sbjct: 1   MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61  IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
           IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT  KVRRERMGHIELASPVAHIWFLKSL
Sbjct: 61  IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121 PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYG-DEFEAK 179
           PSRIGL+ DMTL+D+ER+LYFE++VV+EPG+T L+  ++LTEE Y+ A++EYG D F AK
Sbjct: 121 PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK 180

Query: 180 MGAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMIL 239
           +GAEA+ ++L  IDLE E  Q++ +L    SE +RKK+ KR+KL+EAF  SG++PEWMIL
Sbjct: 181 IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL 240

Query: 240 KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299
           +V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRML
Sbjct: 241 EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML 300

Query: 300 QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
           QE+VDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301 QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360 TLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREH 419
            L+LHQCGLPKKMALELFKPF+Y KLE  G+ATTIKAAK+MVE+E  EVWD+L+EVIREH
Sbjct: 361 ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH 420

Query: 420 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
           PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE
Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480 ARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYAT 539
           AR LMMSTNNILSPANG+P+I PSQD+VLG+YY + ER    G+ +   S+ E++ A A 
Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGAIAN 540

Query: 540 GA------AELHARVKVRITETIIDENGERS 564
            A       + + ++  +  +T++D    R+
Sbjct: 541 NAILFYCPTDPNTKIDTKDLDTLLDRLASRN 571



 Score =  839 bits (2167), Expect = 0.0
 Identities = 443/858 (51%), Positives = 606/858 (70%), Gaps = 19/858 (2%)

Query: 527  FMSVAEVEKAYATGAAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAG 586
            F+++AE+E+A       LH +++ R     +D  G    Q  IVDTT GR +LS ILP  
Sbjct: 632  FVNMAEIEEALTEKTITLHTKIRARFDT--VDSEGTPVTQ--IVDTTPGRMMLSVILPKN 687

Query: 587  --LSFDLVNQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDM 644
              + F L+N+ + KK+I  +++  YR  G K+TVIFAD++M  G+  A  +G S G DD+
Sbjct: 688  KNVPFSLINRLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDDL 747

Query: 645  VIPAEKYTLVADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTE 704
            VIP EK TLV + E +  E ++Q+Q GL+T GE+YNKV+D W+   + V+ AMM+ +S+ 
Sbjct: 748  VIPPEKETLVGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISSL 807

Query: 705  TVINRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFR 764
                   V  KQ   NSIYMMA SGARGSAAQ++QLAGMRGLMAKP G IIETPI++NF+
Sbjct: 808  -------VPGKQ--INSIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFK 858

Query: 765  EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKP 824
            EGL VL+YF STHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT  GLT+ P
Sbjct: 859  EGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVSP 918

Query: 825  LIEGGDVVEPLRERVLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRS 884
            +IEGG+V+  L ER+LGR  A D+  P T +V+     ++ E   + ++   I+ V++RS
Sbjct: 919  VIEGGEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIRS 978

Query: 885  VITCDTDFGVCAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRA 944
            V+TCD++ GVC +CYGRDLARG  +N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAA R 
Sbjct: 979  VLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRG 1038

Query: 945  SAENNVQVKNSGSLKLHNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLE 1004
            + +++++    G++++ N   V N+ G  +++SR+ E+A++D   RE+ R++VPYG  L 
Sbjct: 1039 AEQSSIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKLL 1098

Query: 1005 KLEEASVEAGDIIANWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDV 1064
              E   V  G  +A WDP+T PIITE AG   +VD+ +G++M    DE TG++S V++D 
Sbjct: 1099 VDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVDW 1158

Query: 1065 GQRGSAGKEMRPMIRLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARI 1124
             Q+   G ++RP + L    G +L++    + A+YF+   AI+++++N ++  GD LARI
Sbjct: 1159 KQQ-PRGADLRPRVTLRDEKGEELLL-ANGLEARYFMSVDAILSVENNTKVNAGDVLARI 1216

Query: 1125 PQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGE 1184
            P+ESSKTRDITGGLPRVA+LFEARKPK+ AI+++  G + FGK+ K KRR+++ P + G+
Sbjct: 1217 PRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEE-GD 1275

Query: 1185 QYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQ 1244
              E +IPK ++++V EG+ V RG+ + DG    HDIL++ G+  +A Y++NE+Q+VYRLQ
Sbjct: 1276 AIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRLQ 1335

Query: 1245 GVKINDKHIEVIIRQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFER 1304
            GVKINDKHIEVI+RQML+K  IT  GD+  L GEQV+     I N + + +   PA+   
Sbjct: 1336 GVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGTP 1395

Query: 1305 ELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYA 1364
             L GITKASL T SFISAASFQETTRVLTEAAV GK D+L+GLKENVIVGRLIPAGTG  
Sbjct: 1396 VLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTGAV 1455

Query: 1365 YHKTRNDARAKKDEPVVV 1382
             ++ R  A AK+D+ + V
Sbjct: 1456 MNRLRAIA-AKRDKDMQV 1472