Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1406 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Kangiella aquimarina DSM 16071

 Score = 2134 bits (5529), Expect = 0.0
 Identities = 1078/1402 (76%), Positives = 1219/1402 (86%), Gaps = 6/1402 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MKDLL F+KQQ+++EEF+ I+IGLASPD IRSWSFGEVKKPETINYRTFKPER+GLFCA+
Sbjct: 1    MKDLLNFIKQQNQSEEFDAIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRG+ICEKCGVEVT TKVRRERMGHI+LA PVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSRIG++LDMTLRDIER+LYFE+FVV EPGMT+LE GQ+L+EE YLDALEE+GD+FEAKM
Sbjct: 121  PSRIGMLLDMTLRDIERILYFEAFVVTEPGMTTLEAGQLLSEEGYLDALEEFGDDFEAKM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREE-LPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMIL 239
            GAEA+  LL  IDL++E +++REE +PS NSET+ KK++KRLKL+EAF  SGN P+WMI+
Sbjct: 181  GAEAISALLDLIDLKEEAQRIREEEIPSTNSETKLKKLSKRLKLLEAFLDSGNDPQWMIM 240

Query: 240  KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299
             VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL+RLLDL APDIIVRNEKRML
Sbjct: 241  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  TLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREH 419
            TL+LHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVERE   VWD+L+EVIREH
Sbjct: 361  TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPVVWDILEEVIREH 420

Query: 420  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC AYNADFDGDQMAVHVPLT+EAQLE
Sbjct: 421  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAYNADFDGDQMAVHVPLTIEAQLE 480

Query: 480  ARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYAT 539
            ARALMMSTNNILSPANGEP+I P+QDVVLGLYY +R+R+N +GEGM F    EV++AYA 
Sbjct: 481  ARALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRDRVNAKGEGMIFSDADEVQRAYAN 540

Query: 540  GAAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKK 599
            G  +LHA+VKVR+    IDE G ++ +  + +TTVGR+LL  I+P G+SFDLVN+ M KK
Sbjct: 541  GIVDLHAKVKVRLPMVDIDEEGNKTARIELAETTVGRSLLWGIVPDGISFDLVNKPMTKK 600

Query: 600  QISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEA 659
             ISKL+NTCYR+ GLK TVIFADQLMYTGF YAT SGASVGI+DM IP  K  ++  AE 
Sbjct: 601  AISKLVNTCYRECGLKATVIFADQLMYTGFGYATRSGASVGIEDMSIPEAKAEIIEAAEK 660

Query: 660  EVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASF 719
            EV EIQEQF SGLVT GERYNKV+DIW+  NEKV+KAMM+ + TE V++++G   +Q SF
Sbjct: 661  EVAEIQEQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDFIGTEEVVDKEGNTVRQPSF 720

Query: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA 779
            NSI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE PI ANFREGL+V QYFISTHGA
Sbjct: 721  NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGA 780

Query: 780  RKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERV 839
            RKGLADTALKTANSGYLTRRLVDVAQD+V+ E DCGT EG+ M PLIEGGDVVEPL ERV
Sbjct: 781  RKGLADTALKTANSGYLTRRLVDVAQDMVITEHDCGTEEGVYMSPLIEGGDVVEPLSERV 840

Query: 840  LGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACY 899
            LGRVVA  V+ PGT+D+LA   TLLDE W + LE++S+D+V VRSVITC T  GVCAACY
Sbjct: 841  LGRVVAEHVYVPGTDDILAEAGTLLDEKWVETLEQNSVDQVKVRSVITCQTRNGVCAACY 900

Query: 900  GRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLK 959
            GRDLARGHIIN GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASRASA+NNVQ+KN G ++
Sbjct: 901  GRDLARGHIINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGEIR 960

Query: 960  LHNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIAN 1019
            L NAK V   DGKLVIVSRSSEL +IDE GRE+ERYKVPYG VL   E    + GDI+AN
Sbjct: 961  LKNAKTVERQDGKLVIVSRSSELNVIDEYGRERERYKVPYGAVLSAKEGEQAKGGDIVAN 1020

Query: 1020 WDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQR-GSAGKEMRPMI 1078
            WDPHTHPII E+ G I+FVDMI+GV + RQTDELTGLSSIVI +  QR GS   +++P I
Sbjct: 1021 WDPHTHPIIAELDGKIQFVDMIEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKPAI 1080

Query: 1079 RLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGL 1138
            +L+   G DL IPGTE+PA YFLP +AIV+L+D A++ +GDA+ARIPQESSKT+DITGGL
Sbjct: 1081 KLIDKKGKDLYIPGTEMPAVYFLPTNAIVSLEDGAEVNIGDAIARIPQESSKTKDITGGL 1140

Query: 1139 PRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNV 1198
            PRVADLFEARKPKEPAILAEISGT+SFGKETKGKRRLVITP DGG+ YEE+IPKWR LNV
Sbjct: 1141 PRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPQDGGDTYEELIPKWRQLNV 1200

Query: 1199 FEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIR 1258
            FEGEKVE+GEV++DG +  HDILRL+GI  +A YIVNEVQ+VYRLQGV INDKHIEVIIR
Sbjct: 1201 FEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVIIR 1260

Query: 1259 QMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATES 1318
            QMLRKC++T  GDS FL+G+Q+EV RV   N +LVE GK P  FER L+GITKASLATES
Sbjct: 1261 QMLRKCIVTDPGDSLFLKGDQMEVVRVLEENDKLVEAGKDPVHFERVLMGITKASLATES 1320

Query: 1319 FISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDE 1378
            FISAASFQETTRVLTEAAV GK+D+LRGLKENVIVGRLIPAGTG  YH  R   R K+ E
Sbjct: 1321 FISAASFQETTRVLTEAAVNGKTDDLRGLKENVIVGRLIPAGTGLTYHAER---RRKRAE 1377

Query: 1379 PVVVN-KITASEAEQNLADLLN 1399
             +V +  ++A E EQ L+D L+
Sbjct: 1378 SMVEDLGLSADEVEQALSDELS 1399