Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Dickeya dadantii 3937

 Score = 2251 bits (5833), Expect = 0.0
 Identities = 1133/1406 (80%), Positives = 1247/1406 (88%), Gaps = 2/1406 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MKDLLKFLK Q+KTEEF+ IKI LASPD+IRSWSFGEVKKPETINYRTFKPER+GLFCAR
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSRIGL+LDM LRDIERVLYFES+VV+E GMT+LER Q+LTEE YLDALEE+GDEF+AKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEA+  LL+++DLE+E EQ+REEL   NSET+RKK+TKR+KL+EAF  SGNKPEWMIL 
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIYGKLE RGLATTIKAAKKMVERE A VWD+LDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            RALMMSTNNILSPANGEP+I PSQDVVLGLYY +R+ +N +GEGM      E E+ Y  G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ 600
             A LHARVKVRITE   +  GE +++  ++DTTVGRA+L  I+P GL + +VNQ +GKK 
Sbjct: 541  LASLHARVKVRITEHQKNAQGEWTQKISLIDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600

Query: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE 660
            ISK+LNTCYR LGLK TVIFADQ+MYTGF YA  SG+SVGIDDMVIPA+K  ++++AEAE
Sbjct: 601  ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE 660

Query: 661  VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWA+ANE+V+KAMMENLSTETVINR+G EEKQ SFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEKQVSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780
            SI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI ANFREGLNVLQYFISTHGAR
Sbjct: 721  SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLVV EDDCGTHEG+ M P+IEGGDV EPLRERVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL 840

Query: 841  GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG 900
            GRV A DV  PGT D+L PRNTLL+E WCD LEE+S+D V VRSV+ C+TDFGVCA CYG
Sbjct: 841  GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG 900

Query: 901  RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL 960
            RDLARGHIIN GEAIGV+AAQSIGEPGTQLTMRTFHIGGAASRA+AE+++QVKN GSLKL
Sbjct: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL 960

Query: 961  HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW 1020
             NAK+V N  GKLVI SR++EL +IDE GR KE YKVPYG V+ K + + V  GD +ANW
Sbjct: 961  TNAKFVKNVAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGSEVNGGDTVANW 1020

Query: 1021 DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL 1080
            DPHT P+ITEV GSI+F DMIDG T+TRQTDELTGLSSIV+LD  +R   GK++RP +++
Sbjct: 1021 DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI 1080

Query: 1081 VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR 1140
            V A+G D++IPGT++PAQYFLPG AIV L+D +QI  GD LARIPQES  T+DITGGLPR
Sbjct: 1081 VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGSQIGAGDTLARIPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE 1200
            VADLFEAR+PKEPAILAEISG +SFGKETKGKRRLVITP DG E YEEMIPKWR LNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE 1200

Query: 1201 GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260
            GE+VERG+VI+DGPE+ HDILRLRG+H V  YIVNEVQ+VYRLQGVKINDKHIEVI+RQM
Sbjct: 1201 GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM 1260

Query: 1261 LRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFI 1320
            LRK  I   G SEFLEGEQVE+SR+KIANR+L   GK+ AT+ R+LLGITKASLATESFI
Sbjct: 1261 LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETDGKITATYSRDLLGITKASLATESFI 1320

Query: 1321 SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV 1380
            SAASFQETTRVLTEAAV GK D LRGLKENVIVGRLIPAGTGYAYH+ R   R   + P 
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEVPA 1380

Query: 1381 VVNKITASEAEQNLADLLNLA-GSQD 1405
            V  +++A EA  NLA+LLN   GS D
Sbjct: 1381 VA-QVSADEASANLAELLNAGFGSSD 1405