Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1398 a.a., DNA-directed RNA polymerase subunit beta' from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1602 bits (4148), Expect = 0.0
 Identities = 812/1384 (58%), Positives = 1049/1384 (75%), Gaps = 23/1384 (1%)

Query: 2    KDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARI 61
            +++L        T  F+ IKI LASP+ IRSWSFGE+KKPETINYRTFKPER+GLFCARI
Sbjct: 3    QEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLP 121
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRRERMGHI+LA+PVAHIWFLKSLP
Sbjct: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKSLP 122

Query: 122  SRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDE-FEAKM 180
            SRI LMLDM L+D+ERVLYFE+++V EPG+T L++ Q+LTE+ +    EE+GD+ F A++
Sbjct: 123  SRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGDDGFTAEI 182

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEAV  LL  IDL  E E+ R EL    SE + KK +KRLKL+EAF  SGNKPEWMIL 
Sbjct: 183  GAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMILT 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQ
Sbjct: 243  IVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            ESVDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            L+LH+CGLPKKMALELFKPFIY +L+ +GL+ T+K +K+MVERE   VWD+LDEVIREHP
Sbjct: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIREHP 422

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEP LIEGKAI+LHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            R LMMSTNNILSPANG+P+I PSQD+VLGLYY S  +    GEG  F ++ E++ A    
Sbjct: 483  RVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALDAK 542

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILP--AGLSFDLVNQNMGK 598
               LH R+K R TE    ++ E +E  +++DTT GR  L+ +LP    + + L+ +N+ K
Sbjct: 543  VVTLHTRIKARWTE----QDAEGNEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTK 598

Query: 599  KQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAE 658
            K+I  L++  YR  G K TVIFADQ+M  GFR A  +G S G DD+VIPA+K  LVA+  
Sbjct: 599  KEIGNLIDVVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETR 658

Query: 659  AEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQAS 718
             +V E ++Q+  GL+T GE+YNKV+D W+ A ++++ AMM  ++   V+    +E +   
Sbjct: 659  TQVEEYEQQYADGLITRGEKYNKVVDAWSKATDRIADAMMGEIAQPRVL----IEGENPD 714

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHG 778
             NS++MMA+SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL VL+YF STHG
Sbjct: 715  INSVFMMANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHG 774

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRER 838
            ARKGLADTALKTANSGYLTRRLVDVAQD +V E DCG+  G+T++ ++EGGDV+  L +R
Sbjct: 775  ARKGLADTALKTANSGYLTRRLVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQR 834

Query: 839  VLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAAC 898
            +LGR  A D+  PGT+ VL P +T L E   + +E   +  V VRS +TC+ + G+CA C
Sbjct: 835  ILGRYAAEDIKEPGTDTVLFPADTYLVEEVAEAVEAAGVQSVKVRSALTCEAEAGICAHC 894

Query: 899  YGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSL 958
            YGRDLARG  +N GEA+GV+AAQSIGEPGTQLTMRTFHIGG A  A   + ++  N+G+ 
Sbjct: 895  YGRDLARGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAET-SFMEATNAGTA 953

Query: 959  KLHNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIA 1018
            K+     V    G LV +SR+  + ++ + G+++E +K PYG  +   +   V+    +A
Sbjct: 954  KV-TGPTVVAAHGDLVAMSRNVIVTVVVD-GKDRETHKAPYGARIRVKDGDEVKKNQRLA 1011

Query: 1019 NWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMI 1078
             WDP+T PI+TEV G ++F D+++G+++  +TDE TG++  V+ D  +    G ++RP +
Sbjct: 1012 EWDPYTTPILTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSD-WRASPRGSDLRPAM 1070

Query: 1079 RLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGL 1138
             +   D    +  G++  A+Y LP  A++++ +  ++  G+ +AR+P E +KTRDITGGL
Sbjct: 1071 GVTLGDAYAKLSSGSD--ARYLLPVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGL 1128

Query: 1139 PRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITP---ADG--GEQYEEMIPKW 1193
            PRVA+LFEAR+PK+ A++AE+ G + FG++ K KRR+ ITP   ADG  GE  E +IPK 
Sbjct: 1129 PRVAELFEARRPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKG 1188

Query: 1194 RNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHI 1253
            ++++V +G+ +++G+ I DG    HD+LR++G+  +A Y+VNEVQ+VYRLQGV INDKHI
Sbjct: 1189 KHISVHDGDLIQKGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHI 1248

Query: 1254 EVIIRQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKAS 1313
            EVI+RQML+K  +  +G++  + G+ VEV+   + N ++ ++G   AT +  LLGITKAS
Sbjct: 1249 EVIVRQMLQKVEVLDSGETTLIRGDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKAS 1308

Query: 1314 LATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDAR 1373
            L T SFISAASFQETTRVLT+A+V GK D L GLKENVIVGRLIPAGTG AY ++     
Sbjct: 1309 LQTRSFISAASFQETTRVLTDASVHGKKDMLEGLKENVIVGRLIPAGTG-AYLRSLQKIA 1367

Query: 1374 AKKD 1377
             ++D
Sbjct: 1368 NERD 1371