Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

 Score = 1605 bits (4155), Expect = 0.0
 Identities = 810/1381 (58%), Positives = 1044/1381 (75%), Gaps = 16/1381 (1%)

Query: 2    KDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARI 61
            ++++     Q   + F+ I+I +ASP+ I SWS+GE+KKPETINYRTFKPER+GLFCARI
Sbjct: 3    QEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLP 121
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEVT ++VRRERMGHIELA+PVAHIWFLKSLP
Sbjct: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122

Query: 122  SRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYG-DEFEAKM 180
            SRI  +LDMTL+D+ERVLYFE+++V EPG+TSL++ Q+L+EE Y+ A++E+G D+F A +
Sbjct: 123  SRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMI 182

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEA+ E+L +++LEK    +R EL    S+ ++KK  KRLK++E F  SGN+PEWMI+K
Sbjct: 183  GAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMK 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP II+RNEKRMLQ
Sbjct: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            ESVDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP 
Sbjct: 303  ESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            L+LHQCGLPKKMALELFKPFIY +L+ +G ++T+K AKK+VE+E  EVWD+LDEVIREHP
Sbjct: 363  LKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHP 422

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEP+L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            R LMMSTNNIL PANG P+I PSQD+VLGLYY S    N  GEGM F  + E+  A    
Sbjct: 483  RVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALENK 542

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLS--FDLVNQNMGK 598
               LHA+++ R     +D +G+     +I +TT GR L+ ++LP  ++  FD  NQ M K
Sbjct: 543  VVTLHAKIRGRF--KTVDADGK--PVSKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTK 598

Query: 599  KQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAE 658
            K ISK+++T YR  G KDTVIF D++M  GF +A  +G S G DDMVIP  K  +V D E
Sbjct: 599  KNISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTE 658

Query: 659  AEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQAS 718
            A V E ++Q+  GL+T GE+YNKV+D W  A EKV++ MM  +     +  D    +Q  
Sbjct: 659  ALVKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIK---AVEFDPETGRQKP 715

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHG 778
             NSIYMM+ SGARGS  Q+RQL GMRGLMAKP G IIETPI++NF+EGL V +YF STHG
Sbjct: 716  MNSIYMMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHG 775

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRER 838
            ARKGLADTALKTANSGYLTRRLVDVAQD +V   DCGT +GLTM  +++ G +V  +  R
Sbjct: 776  ARKGLADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGAR 835

Query: 839  VLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAAC 898
            +LGR    D+  P T + +    TL+DEA    +E+  I  V +RS +TC+   GVC  C
Sbjct: 836  ILGRTALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVC 895

Query: 899  YGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSL 958
            YGRDLARG  +N GEA+GV+AAQSIGEPGTQLTMRTFH+GG A+    ++ ++    G++
Sbjct: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVD-QSFLEASYEGTI 954

Query: 959  KLHNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIA 1018
            ++ N   + N++G L+ + R+  + I+DE G E+   +V YG+ +   +   V+ G  +A
Sbjct: 955  QIKNRNILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLA 1014

Query: 1019 NWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMI 1078
             WDP+T P++TEV G++ F D++DG+++   TDE TG++   ++D  +    G +++P I
Sbjct: 1015 EWDPYTRPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVID-WRSTPRGSDLKPAI 1073

Query: 1079 RLVGADGSDLMIP-GTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGG 1137
             +  A G+   +  G E  A++ L   AI++++  ++++ GD LAR P ES+KT+DITGG
Sbjct: 1074 IIKDASGAVAKLSRGGE--ARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGG 1131

Query: 1138 LPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPA-DGGEQYEEMIPKWRNL 1196
            LPRVA+LFEAR+PK+ AI+AEI GTI  G++ K KRR++I PA DG E  E +IPK +  
Sbjct: 1132 LPRVAELFEARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPF 1191

Query: 1197 NVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVI 1256
            ++ EG+ +E+GE I DG  A HDIL ++G+  +A+Y+VNE+Q+VYRLQGV INDKHIEVI
Sbjct: 1192 HLQEGDYIEKGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVI 1251

Query: 1257 IRQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLAT 1316
            +RQML+K  IT AGDS+++ G+ V+   ++  N  L+E+GK PA  E  LLGITKASL T
Sbjct: 1252 VRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQT 1311

Query: 1317 ESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKK 1376
             SFISAASFQETT+VLTEAA+ GK+D L+GLKENVIVGRLIPAGTG    + R  A ++ 
Sbjct: 1312 PSFISAASFQETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRD 1371

Query: 1377 D 1377
            D
Sbjct: 1372 D 1372