Pairwise Alignments

Query, 255 a.a., general secretion pathway protein J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 246 a.a., type II secretion system minor pseudopilin GspJ from Dickeya dianthicola ME23

 Score =  136 bits (342), Expect = 5e-37
 Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 11  GFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTKNFSTRLKALQQGFGAIERDLGQMV 70
           GFTLLE+++A+AIFA L LAA+ V++ V+ NDE +     RL  LQ+GF  +ERD  Q+V
Sbjct: 7   GFTLLEVMLALAIFAALSLAASQVMNGVMRNDEASARKEARLAELQRGFSLMERDFSQIV 66

Query: 71  ARTPRLLEGGRGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSLQSVAYVVREGK 130
            R  +  E G     +Q     L S   A+ F R GWLNP G++PR  LQ V Y +R   
Sbjct: 67  PRRSQGYELGFYAERYQ-----LSSADWAVSFIRNGWLNPLGIMPRSELQRVGYRLRGDT 121

Query: 131 LERWYFPYPEPEFGAEPIKTVIIDKVLSVEYSFFMEDKW-ERKVEATKLPKAIAMEIEIE 189
           LER ++   EP    E     ++  V      FF +D W +R  +   LP+ +A+ + + 
Sbjct: 122 LERLFYDSSEPLSTQEAAIRPVLTGVTGFVLRFFGKDGWQDRWDDPAHLPQGMAIVVTLR 181

Query: 190 GLGKIQRKFML-PLGAAAPEKSKEEGNKDENTEDNKEDNGDSDNNGDGSGN----GEEDP 244
             G+I R F++ P   AA  K    GN  +  +D    +  S  N D SG       +D 
Sbjct: 182 DYGEITRVFLVTPRYVAAQRKGDPNGNNGDENKDENSQSQSSQENTDSSGEQHQASPDDN 241

Query: 245 GKGD 248
           G GD
Sbjct: 242 GGGD 245