Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 883 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  131 bits (329), Expect = 8e-35
 Identities = 83/248 (33%), Positives = 136/248 (54%), Gaps = 6/248 (2%)

Query: 102 LLAALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLS 161
           L  AL  ++LA+     +   E  QLR+++L SVSHDLRTPL ++ G++ +L      + 
Sbjct: 626 LAQALARAQLAQELESARLHGETEQLRSALLASVSHDLRTPLTSMRGSIDSLLALGEAIP 685

Query: 162 PAQTEELIDSAAAESHRLHQYIENLLQANKLQHGALKFSLDEANIREVLQRTIARFQTEQ 221
                EL++    E+ RL +YI+NLL   +L HGALK + D  +  +++   + R +   
Sbjct: 686 LEDRRELLEGTRDEAERLDRYIQNLLDMTRLGHGALKLARDWVSPGDIVGSALGRLRAVL 745

Query: 222 PRIQIQSE--PELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQ 279
             +++ ++   ELP L + ++LIEQA+ NVL+NA  +SP    + +S       L   + 
Sbjct: 746 APLKVSTDVPAELPLLYVHAALIEQALVNVLENAARFSPPQGRLQLSAGVADDQLFFAVA 805

Query: 280 DQGKGIAPSQTGAIFELFYRQHPTTDG--GAGLGLPVAKGIITAHNGTIS-AEKV-AHGS 335
           D+G GI   +   IF++FY       G  G GLGL + +G++ AH G IS A+ +   G+
Sbjct: 806 DEGPGIPEEERAKIFDMFYTAARGDRGGQGTGLGLAICQGMVGAHGGHISVADGIDGRGT 865

Query: 336 LIRIALPI 343
            I + LP+
Sbjct: 866 CITLFLPL 873



 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 32/95 (33%), Positives = 49/95 (51%)

Query: 45  VLLILQLAVVVVALQCSANYAYFVAVFGAVSFNFLFTAPRYSLQMLNVEDIVNLTVFLLA 104
           + L+   AV++VA++ S   +   A    ++++FLF  P +S  +   ED++ L  FLL 
Sbjct: 416 ISLVFLAAVLLVAVRSSLGPSLVCAALSFLTYDFLFIPPNFSFSIQREEDVLTLLFFLLM 475

Query: 105 ALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDL 139
           A  +  LA   RRQ  AL   Q   S LL +S  L
Sbjct: 476 AALTGNLAARQRRQLQALRDTQEETSELLDLSRKL 510