Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 906 a.a., Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  132 bits (332), Expect = 4e-35
 Identities = 86/283 (30%), Positives = 147/283 (51%), Gaps = 9/283 (3%)

Query: 72  GAVSFNFLFTAPRYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQQDALEQAQLRNSI 131
           G V  +F  T  R S +   + +  ++T  +  A   ++L       +   E  +LR+++
Sbjct: 622 GVVGLHFPSTMGRLSFEQRRLAE--SMTDDIGQAALRARLVSELEVAKVTGETERLRSAL 679

Query: 132 LLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQTEELIDSAAAESHRLHQYIENLLQANK 191
           L SVSHDLR+PL+++IG   +L  Y   +S     +L+ +   E  RL +YI+NLL   +
Sbjct: 680 LSSVSHDLRSPLSSMIGAADSLARYGKDMSADDRSDLLQTIRVEGERLDRYIQNLLDMTR 739

Query: 192 LQHGALKFSLDEANIREVLQRTIARFQTEQP--RIQIQSEPELPSLMICSSLIEQAIFNV 249
           L    L  + D   + E++     R Q  +P  +++I  +  +  + +  +LIEQA+FNV
Sbjct: 740 LGQQGLTLTRDWIGVDELVGSAARRLQRYEPSVKVEIDIDAVVGLIHVHPALIEQALFNV 799

Query: 250 LDNALHYSPATQPVTV-SLYRHQHMLRIDIQDQGKGIAPSQTGAIFELFYRQHPTTDG-- 306
           ++NA  +SP  +P+ V +       ++IDI D+G GI   +   IF++FY       G  
Sbjct: 800 MENAAKFSPPDEPIRVQARLAEGPAVQIDISDRGPGIPADERRRIFDMFYSVERGDRGRQ 859

Query: 307 GAGLGLPVAKGIITAHNGTISA--EKVAHGSLIRIALPITKES 347
           G GLGL + +GI+ AH G + A       G+ +R+ LP  ++S
Sbjct: 860 GTGLGLTIVQGIVGAHMGKVEALPGPQGRGTSVRLTLPKGEQS 902



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 18  ALFTAMLLVVVLITSYFIDVFSGSAIAVLLILQLAVVVVALQCSANYAYFVAVFGAVSFN 77
           AL TA  +   ++   F+ +   S + ++     AV++VA +     A   AV   +++N
Sbjct: 421 ALATAGAIAAAVVAERFLGLEDLSTVFLV-----AVLLVASRTRMAAAVITAVLCFLAYN 475

Query: 78  FLFTAPRYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQQDALEQAQLRNSILLSVSH 137
           F F  PR++  +     +  + +F+ AAL + +LA   R Q  +L  A    + + +++ 
Sbjct: 476 FFFIDPRFTFLISAPRGVATVMLFMAAALIAGRLASRLRMQVISLRTANTHTTAMQNLAR 535

Query: 138 DL 139
            L
Sbjct: 536 QL 537