Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 895 a.a., sensor histidine kinase KdpD from Magnetospirillum magneticum AMB-1

 Score =  152 bits (385), Expect = 2e-41
 Identities = 87/252 (34%), Positives = 141/252 (55%), Gaps = 8/252 (3%)

Query: 105 ALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQ 164
           A+  + L       + A E+ +LR+++L S+SHDLRTPL +I+G  ++L  Y   L PA 
Sbjct: 640 AIERTTLVSDIEAARVATERERLRSALLSSLSHDLRTPLVSIMGAASSLISYDDILGPAD 699

Query: 165 TEELIDSAAAESHRLHQYIENLLQANKLQHGALKFSLDEANIREVLQRTIARFQ--TEQP 222
             +L  +   E+ RL+++++NLL   +L  G LK  +D A++ +++   + R    T   
Sbjct: 700 RRDLAQTVQDEAERLNRFVQNLLDMTRLGSGTLKPRIDWADLSDIVGGAVERAARLTRSH 759

Query: 223 RIQIQSEPELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQDQG 282
            +++  +P++P L + + L+ Q  FN+LDNA  YSP    + V   R    + I++ DQG
Sbjct: 760 AVKVDIDPDMPLLCVDAVLLGQVFFNLLDNACKYSPPGTGIKVWARRAADHISIEVADQG 819

Query: 283 KGIAPSQTGAIFELFYRQHPTTD--GGAGLGLPVAKGIITAHNGTISAEKVAHGS----L 336
            GI  +    +F++FYR   T     G GLGL + +GI+ AH GTI AE   HGS    +
Sbjct: 820 PGIPEADREKVFDMFYRVGLTDSQPAGTGLGLAICRGIVEAHGGTIRAEAGLHGSGTAII 879

Query: 337 IRIALPITKESA 348
           IR+ LP + + A
Sbjct: 880 IRLPLPPSPDVA 891



 Score = 50.1 bits (118), Expect = 2e-10
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 41  SAIAVLLILQLAVVVVALQCSANYAYFVAVFGAVSFNFLFTAPRYSLQMLNVEDIVNLTV 100
           S  ++ +   LAV+VVA+          +V   ++FNF FT PR++  + +V++++ L  
Sbjct: 421 SVASISVAYLLAVMVVAMWIGLRPGILASVASFLAFNFFFTEPRFTFAVSDVQNLLTLAF 480

Query: 101 FLLAALTSSKLAKHYRRQQDALEQAQLR 128
           FL+AA   S +A   R Q  A  ++  R
Sbjct: 481 FLIAAFIVSGMASRLRAQVQASRESARR 508