Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 900 a.a., two component sensor kinase from Agrobacterium fabrum C58

 Score =  131 bits (330), Expect = 6e-35
 Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 6/249 (2%)

Query: 105 ALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQ 164
           A+   +LA    R + A E  +LR ++L S+SHDL+TPLA I+G+  TLK++   + P  
Sbjct: 646 AVERIQLASDVDRARLAAETDRLRTALLTSISHDLKTPLAAILGSAGTLKDFADDIPPDA 705

Query: 165 TEELIDSAAAESHRLHQYIENLLQANKLQHGALKFSLDEANIREVLQRTIARFQ--TEQP 222
             EL+ +   ES RL+++I NLL   ++  GA++ +     + +++   ++R      + 
Sbjct: 706 RAELLSTIVEESERLNRFISNLLDMTRIGSGAMEPNYGLHFLGDMVGTALSRAAKIVVRH 765

Query: 223 RIQIQSEPELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQDQG 282
            + +    +LP L +   L EQ +FN++DNA  Y+P    + +  +R    + + + D+G
Sbjct: 766 EVVLDIPSDLPMLKVDPVLFEQVLFNLIDNAAKYAPEHTTIAIRGWRQGKNIFLSVADEG 825

Query: 283 KGIAPSQTGAIFELFYRQHPT--TDGGAGLGLPVAKGIITAHNGTISAEKVAH--GSLIR 338
            GI P     +F+ FYR         G GLGL + KG I A  G+I AE  A   G+   
Sbjct: 826 PGIPPDDLERVFDSFYRVRKVDHVQAGTGLGLSICKGFIEAMGGSIRAENRADRGGAQFT 885

Query: 339 IALPITKES 347
           I LP+  ++
Sbjct: 886 IGLPVAVDT 894



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 19  LFTAMLLVVVLITSYFIDVFSGSAIAVLLILQLAVVVVALQCSANYAYFVAVFGAVSFNF 78
           LF  + ++V ++    +DV +     + L+  +AV+  A++     A + ++ GA++FNF
Sbjct: 410 LFVGLAIIVGIVLDQTLDVQN-----LALVFLMAVLAAAVRGGLGPALYASLLGALAFNF 464

Query: 79  LFTAPRYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQ 118
            F  PRY+L + + + +V L  +   AL +S L    +RQ
Sbjct: 465 FFLEPRYTLTVSSPDSLVALLFYFGVALVASNLTVAVQRQ 504