Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 898 a.a., type I DNA topoisomerase from Rhizobium sp. OAE497

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 23  LCPECGS-ELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIE---TQVIEGSKC---PEC 75
           +C  CG+  LS+K  K+G+F+GC+NYP C YTR L    + E   T + E       P  
Sbjct: 608 ICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLSSENNGEGEGTALNEPKNLGTDPTT 667

Query: 76  GHELAVKSGRFGIFI 90
           G EL ++SGRFG +I
Sbjct: 668 GEELTLRSGRFGPYI 682



 Score = 38.5 bits (88), Expect = 3e-07
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 11/71 (15%)

Query: 72  CPECGH-ELAVKSGRFGIFIGCTQYPSCTHIERPDQES---------DKPQVACPECKTG 121
           C  CG   L++K G++G F+GC+ YP C +  +   E+         ++P+    +  TG
Sbjct: 609 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLSSENNGEGEGTALNEPKNLGTDPTTG 668

Query: 122 -KLEHRTSRFG 131
            +L  R+ RFG
Sbjct: 669 EELTLRSGRFG 679



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           P +E       C  C TG L  +  ++G  F  CS YP+C +
Sbjct: 598 PKREDGSDPRICQVCGTGNLSLKLGKYG-AFVGCSNYPECNY 638