Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 24  CPECGS-ELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSK----CPECGHE 78
           CP C +  LS+K  K G+FIGC+ YP C +TRPL      E +V EG K     PE G  
Sbjct: 603 CPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGEGEEEVREGPKELGNDPESGLP 662

Query: 79  LAVKSGRFGIFI 90
           + ++ G +G ++
Sbjct: 663 VTLRKGPYGHYV 674



 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           PD  +     +CP C  G+L  +  +FG  F  CSAYP+C+F
Sbjct: 592 PDNGTGHDPRSCPTCNAGRLSLKLGKFG-AFIGCSAYPECRF 632



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 72  CPECGH-ELAVKSGRFGIFIGCTQYPSC 98
           CP C    L++K G+FG FIGC+ YP C
Sbjct: 603 CPTCNAGRLSLKLGKFGAFIGCSAYPEC 630