Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 865 a.a., DNA topoisomerase 1 from Escherichia fergusonii Becca

 Score = 44.7 bits (104), Expect = 5e-09
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 28/157 (17%)

Query: 24  CPECGSELSVKHSKHGSFIGCNNY-----PNCAYTRPLVQHESIETQVIEGS-------- 70
           CP CG ++ ++ +  G F+GC+ Y       C  T  LV    +   V+EG         
Sbjct: 599 CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEV-LNVLEGEDAETNALR 657

Query: 71  ---KCPECGHEL--AVKSGRFGIFIGCTQYPSCTHIERPDQE-----SDKPQVACPECKT 120
              +CP+CG  +   +   +  + + C   P+C   E  + E      D P V C +C +
Sbjct: 658 AKRRCPKCGTAMDSYLIDPKRKLHV-CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGS 716

Query: 121 GKLEHRTSRFGKGFYACSAYPKCKFIVNYPPVGETCP 157
            ++  +  RFGK  Y      +CK        GE  P
Sbjct: 717 -EMHLKMGRFGK--YMACTNEECKNTRKILRNGEVAP 750



 Score = 37.4 bits (85), Expect = 7e-07
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 31/152 (20%)

Query: 66  VIEGSKCPECGHELAVKSGRFGIFIGCTQY------------------PSCTHIERPDQE 107
           V+    CP CG ++ +++   G+F+GC+ Y                       +E  D E
Sbjct: 593 VLTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAE 652

Query: 108 SD--KPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCK---------FIVNYPPVGETC 156
           ++  + +  CP+C T    +      K  + C   P C           I  Y      C
Sbjct: 653 TNALRAKRRCPKCGTAMDSYLIDPKRK-LHVCGNNPTCDGYEIEEGEFRIKGYDGPIVEC 711

Query: 157 PSCGFGILVERKGAAGMRLECPQKSCKYKRAL 188
             CG  + + + G  G  + C  + CK  R +
Sbjct: 712 EKCGSEMHL-KMGRFGKYMACTNEECKNTRKI 742