Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 868 a.a., type I DNA topoisomerase from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 24  CPECGS-ELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSK----CPECGHE 78
           CP C   +LS+K S+ G+FIGC+ YP C YTRP+    + +     G +     PE G  
Sbjct: 603 CPLCHQGQLSLKTSRFGAFIGCDRYPECKYTRPVASPSAEDGSAESGDRELGIDPETGQP 662

Query: 79  LAVKSGRFGIFIGCT 93
           + +K GRFG ++  T
Sbjct: 663 VQLKIGRFGPYVEIT 677



 Score = 40.4 bits (93), Expect = 9e-08
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           PD+        CP C  G+L  +TSRFG  F  C  YP+CK+
Sbjct: 592 PDKGDGTDPRECPLCHQGQLSLKTSRFG-AFIGCDRYPECKY 632



 Score = 40.4 bits (93), Expect = 9e-08
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 71  KCPECGH-ELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPQVACPECKTGKLEHRTSR 129
           +CP C   +L++K+ RFG FIGC +YP C +  RP        VA P  + G  E     
Sbjct: 602 ECPLCHQGQLSLKTSRFGAFIGCDRYPECKY-TRP--------VASPSAEDGSAESGDRE 652

Query: 130 FG 131
            G
Sbjct: 653 LG 654