Pairwise Alignments
Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002
Score = 47.0 bits (110), Expect = 1e-09
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 30/158 (18%)
Query: 24 CPECGSELSVKHSKHGSFIGCNNY-----PNCAYTRPLV---------QHESIETQVIEG 69
C +CG E++V+ + G F+GC+ Y C T L E +ET+ +
Sbjct: 607 CDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELETEALRS 666
Query: 70 SK-CPECG----HELAVKSGRFGIFIGCTQYPSC--THIERPD---QESDKPQVACPECK 119
K CP+CG L ++ + + C P+C T +E + D P + C +C
Sbjct: 667 KKRCPKCGTAMDSYLVDETRKLHV---CGNTPTCDGTLVETGTFKIKGYDGPIIECDKCG 723
Query: 120 TGKLEHRTSRFGKGFYACSAYPKCKFIVNYPPVGETCP 157
+ +E + RFGK ++ C+ +CK GE P
Sbjct: 724 S-DMELKNGRFGK-YFGCTK-EECKNTRKLLRNGEAAP 758
Score = 44.7 bits (104), Expect = 5e-09
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 6 DEQLFSAHEHALEKEY----ELCPECGSEL-SVKHSKHGSFIGCNNYPNCAYTRPLVQHE 60
DE + E LE E + CP+CG+ + S + C N P C T LV+
Sbjct: 648 DEVVKVDDEEELETEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGT--LVETG 705
Query: 61 SIETQVIEGS--KCPECGHELAVKSGRFGIFIGCTQ 94
+ + + +G +C +CG ++ +K+GRFG + GCT+
Sbjct: 706 TFKIKGYDGPIIECDKCGSDMELKNGRFGKYFGCTK 741
Score = 42.7 bits (99), Expect = 2e-08
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 69 GSKCPECGHELAVKSGRFGIFIGCTQY-----PSCTHI---------------ERPDQES 108
G +C +CG E+ V++ G+F+GC+ Y CT+ E + E+
Sbjct: 604 GVECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELETEA 663
Query: 109 DKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCK---------FIVNYPPVGETCPSC 159
+ + CP+C T + K + C P C I Y C C
Sbjct: 664 LRSKKRCPKCGTAMDSYLVDETRK-LHVCGNTPTCDGTLVETGTFKIKGYDGPIIECDKC 722
Query: 160 GFGILVERKGAAGMRLECPQKSCKYKRAL 188
G + + + G G C ++ CK R L
Sbjct: 723 GSDMEL-KNGRFGKYFGCTKEECKNTRKL 750