Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score = 57.0 bits (136), Expect = 9e-13
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 23  LCPECGS-ELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSK------CPEC 75
           +C  CG+  LS+K  K+G+F+GC+NYP C YTR L   +  E      ++       P  
Sbjct: 607 ICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTS-DGAEADAAASNEPKALGADPMT 665

Query: 76  GHELAVKSGRFGIFI 90
           G EL ++SGRFG +I
Sbjct: 666 GEELTLRSGRFGPYI 680



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 72  CPECGH-ELAVKSGRFGIFIGCTQYPSCTH--------IERPDQESDKPQVACPECKTG- 121
           C  CG   L++K G++G F+GC+ YP C +         E     S++P+    +  TG 
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEADAAASNEPKALGADPMTGE 667

Query: 122 KLEHRTSRFG 131
           +L  R+ RFG
Sbjct: 668 ELTLRSGRFG 677



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           P +E       C  C TG L  +  ++G  F  CS YP+C +
Sbjct: 597 PKREDGSDPRICQVCGTGNLSLKLGKYG-AFVGCSNYPECNY 637