Pairwise Alignments

Query, 168 a.a., polypeptide deformylase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 170 a.a., Peptide deformylase 1 from Azospirillum sp. SherDot2

 Score =  131 bits (329), Expect = 7e-36
 Identities = 79/171 (46%), Positives = 103/171 (60%), Gaps = 5/171 (2%)

Query: 1   MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
           MA L +L  P   L+ +A P+ E +A +   +DDM ETMY   GIGLAA QV    ++IV
Sbjct: 1   MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAVGIGLAAPQVGVLDRVIV 60

Query: 61  MDLQDEVERPKVF--INPEIIASSGD--FCNEEGCLSVPGIYAKVDRAEFVTVKALDRHG 116
           +D+ ++ E P      NPEI+ SS +   C EEGCLSVP  YA V R   + V+ LD   
Sbjct: 61  VDVHEKGEPPNPIRLANPEIVWSSDEKAVC-EEGCLSVPEQYADVTRPVRIRVRYLDEKN 119

Query: 117 NEFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQDA 167
               +EAD + A CIQHE+DHL G LFVDYLS LKR  + +K++K  K  A
Sbjct: 120 QPQEIEADGMLATCIQHEIDHLNGVLFVDYLSILKRNILLKKVQKMQKATA 170