Pairwise Alignments

Query, 266 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 288 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score = 56.2 bits (134), Expect = 8e-13
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 26  LELDRKLADPQFDTKDLLALIEQDPLLSVEVLKLCNSPAFKRGEREVTSLQQALVQLGRE 85
           L++++ + DP  D + +  LI QDP LS  +LK+ NS  F    + + S+Q+A+  LG  
Sbjct: 29  LQMEQYMPDP--DLEVIARLISQDPGLSGALLKIVNSSYFGLSNK-IASIQRAVNLLGSR 85

Query: 86  QLRRFVTS-SLVREMLDIKPIYFRRFGAEIWRHSMQVAFLASELSEEDRDTAFLLGLLHD 144
            +   + + S+  EM D   +   RF       +M    LA     +  D A+ LGL HD
Sbjct: 86  SIINLINALSIKGEMSDDTIVTLNRFWDTAQDVAMTCLTLAKRTGAQAVDEAYALGLFHD 145

Query: 145 VG---KLAIFKMLLDAFVQAEPGEQPNSWLF---RQVMTAKSLTLSALLAKHWQLPSTFE 198
            G    L  F   +    QA     P+S +              +    AK W+LP   E
Sbjct: 146 CGVPLMLKRFPNYMSVLEQAYANAGPDSRVVDTENNAFNTNHAVVGYYTAKSWRLP---E 202

Query: 199 TELDKLAHVH 208
              D +A+ H
Sbjct: 203 HVTDAIANHH 212