Pairwise Alignments

Query, 266 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 285 a.a., HD-GYP domain (HD superfamily hydrolase) from Pseudomonas sp. S08-1

 Score = 57.0 bits (136), Expect = 4e-13
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 16  EKVLKLPSKVLELDRKLADPQFDTKDLLALIEQDPLLSVEVLKLCNSPAFKRGEREVTSL 75
           E++  LP+  L++ R L+D Q  T  L  L+ +DP L+  ++K   S A  R      +L
Sbjct: 23  EQLPSLPALTLDIRRALSDGQISTGALARLVSRDPALAALLMKHA-SCALYRHPMAPRTL 81

Query: 76  QQALVQLGREQLRRFVTSSLVREMLDIKPIYFRRFGAEIWRH----SMQVAFLASELSEE 131
           Q  +  LG  ++ R      ++ +  +     +R   E+W      +   A LA  +   
Sbjct: 82  QDVIALLGMGEVDRITMVHSIKSLFTLHSPAHKRLFMEVWGRLTLKASTCAMLARLIGHV 141

Query: 132 DRDTAFLLGLLHDVGKLAIFKMLLDAFVQAEPGEQPNSWLFRQVMTAKSLTLSALLAKHW 191
             + A L  LL +VG LA+    L AF   +  E P+  L+ ++    S +L  ++ K W
Sbjct: 142 APEHALLASLLSEVGTLAV----LSAF--KDEAEIPSGELYYKLCREYSKSLGVIVLKKW 195

Query: 192 QLPSTF 197
            +   +
Sbjct: 196 AVDDEY 201