Pairwise Alignments

Query, 266 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 281 a.a., HDOD domain protein from Alteromonas macleodii MIT1002

 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 17/208 (8%)

Query: 15  AEKVLKLPSKVLELDRKLADPQFDTKDLLALIEQDPLLSVEVLKLCNSPAFKRGEREVTS 74
           AE +  LP  V  L   + D      D+  +I  DP L+ ++L++ NS A  R   ++ +
Sbjct: 10  AENLFVLPDSVTRLKACMDDEASSIDDIGDIIAFDPSLATQLLRVANS-ALYRFPNKIDT 68

Query: 75  LQQALVQLGREQLRRFVTSSLVREM---LDIKPIYFRRFGAEIWRHSMQVAFLASELSE- 130
           + +A+  +G         +  V +    +D + I   +F    W  S+    LA   ++ 
Sbjct: 69  VTRAIQVVGTRSTYDLALAYGVSQAFSDVDGQRIDLDKF----WEQSVSCGLLAKYFADM 124

Query: 131 ---EDRDTAFLLGLLHDVGKLAIFKMLLDAFVQAEPGEQPNSWLFRQ--VMTAKSLTLSA 185
               + +  F+ GLLH++G+L    +L ++  + +      S    Q  V+      LSA
Sbjct: 125 RNIREPERLFVSGLLHNIGELVTVSVLPESATRCQAFNTRVSPAELQFGVLGFTYAELSA 184

Query: 186 LLAKHWQLPSTFETELDKLAHVHTRPNE 213
            L + W +PS+  T    +A +H    E
Sbjct: 185 RLIEKWDIPSSIYT---PIASIHKEEEE 209