Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 803 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Dickeya dianthicola ME23

 Score = 1177 bits (3044), Expect = 0.0
 Identities = 580/804 (72%), Positives = 676/804 (84%), Gaps = 5/804 (0%)

Query: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITIT 63
           NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAG+C DI +T
Sbjct: 3   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVVT 62

Query: 64  IHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123
           IH D SVSV+DDGRGIP  IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 63  IHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122

Query: 124 VNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSN-VEF 182
           VNALS+KL+L IRR+GKVH Q Y HGVP AP+   GDA  TGT +RFWPS +TF+N VEF
Sbjct: 123 VNALSEKLELVIRREGKVHRQEYRHGVPQAPLGATGDADATGTTVRFWPSLETFTNMVEF 182

Query: 183 HFEILAKRVRELSFLNSGVGIRLVDERD-NKNEFFKYEGGISAFVDYLNRNKTPVNKDVF 241
            ++ILAKR+RELSFLNSGV IRL DER+ NK + F YEGGI AFV+YLNRNKTP++  VF
Sbjct: 183 EYDILAKRLRELSFLNSGVSIRLRDEREENKADHFHYEGGIKAFVEYLNRNKTPIHPQVF 242

Query: 242 HFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENE 301
           +F  E+D  I VE+AMQWNDG+QENI+CFTNNIPQRDGGTHLAGFR+A+TR LNNYM+ E
Sbjct: 243 YFSAEKDS-IGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKE 301

Query: 302 GYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDY 361
           GY+KK K +ATGDDAREGL AV+SVKVPDPKFSSQTKDKLVSSEVK+A+E  M ++L DY
Sbjct: 302 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSALESLMNDRLVDY 361

Query: 362 LLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEI 421
           L+ENP DAK++VGKI+DAARAREAARKAREMTRRKGALDL GLPGKLADCQE+DP LSE+
Sbjct: 362 LMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL 421

Query: 422 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 481
           Y+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
Sbjct: 422 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 481

Query: 482 DEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKG 541
           DEYNPDK RYHNIIIMTDADVDGSHIRTLLLTFF+RQMPE++ERG+V+IAQPPL+KVKKG
Sbjct: 482 DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVKKG 541

Query: 542 KQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQR 601
           KQEQY+KD+ A+ QY    ALD  +++ +  AP ++GEPLE+LV +Y   + ++ R+E+R
Sbjct: 542 KQEQYIKDDEAMDQYQIMLALDSATLHTNAHAPALAGEPLEKLVAEYYGAQKLIDRMERR 601

Query: 602 YPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKVY 661
           YP  + N ++Y P ++   L D+A+ ++WID+ IH L E E  G  YS   +L    + +
Sbjct: 602 YPRALLNALVYQPALTEARLNDQAQAQQWIDSLIHYLNEKEQHGSTYSF--LLRQSNERH 659

Query: 662 LPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSFI 721
            P + +R HG+D+ Y     F Q  +Y++I  LG  L GLIE   YV+RG+R + V SF 
Sbjct: 660 EPVLRVRTHGVDSDYALDLAFVQGNEYRKINLLGEKLRGLIEDSAYVERGERKQPVASFE 719

Query: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCL 781
           +ALDW + E++RGL IQRYKGLGEMNPEQLWETTMDPESRRML+VT+ DA+ AD+LFT L
Sbjct: 720 QALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTL 779

Query: 782 MGDQVEPRREFIEANALNVANLDV 805
           MGD VEPRR FIE NAL  AN+D+
Sbjct: 780 MGDAVEPRRAFIEENALKAANIDI 803