Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 808 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  825 bits (2132), Expect = 0.0
 Identities = 441/808 (54%), Positives = 564/808 (69%), Gaps = 25/808 (3%)

Query: 6   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITITIH 65
           Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDN+IDEALAGH   + + ++
Sbjct: 11  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILN 70

Query: 66  VDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 125
            DGSV+V D+GRGIP  IHE EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 71  SDGSVTVTDNGRGIPTGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 130

Query: 126 ALSKKLQLTIRRDGKVHEQFYTHG--------VPDAPIKEIGDATKTGTEIRFWPSEQTF 177
           ALS  L+L I RDGK H+  +  G          DAPI+E      +GTE+ F+PS  TF
Sbjct: 131 ALSDWLELKIYRDGKAHQMRFERGDTVKSLEVTGDAPIREDTGKPLSGTEVTFFPSVTTF 190

Query: 178 SNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNK--NEFFKYEGGISAFVDYLNRNKTP 235
           S+++F  + L  R+REL+FLNSGV I+L D+R  +       YEGG+ AFV +L+++KTP
Sbjct: 191 SHIDFDLKTLEHRLRELAFLNSGVVIKLADQRHAEPVEMILHYEGGVEAFVRHLDKSKTP 250

Query: 236 VNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLN 295
           + KDV   ++ + +GI +++A+ WND Y E + CFTNNIPQRDGGTHL+ FR++LTR + 
Sbjct: 251 ILKDVI-VIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMG 309

Query: 296 NYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMG 355
            Y+E+ G  KK K + TG+DAREGLT V+SVKVPDPKFSSQTKDKLVSSEV+ AVE    
Sbjct: 310 GYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLCS 369

Query: 356 EKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 415
           E L  +  E+P +AK IV KI++AA AREAARKAR++TRRK AL++  LPGKLADCQE+D
Sbjct: 370 EGLATWFEEHPVEAKQIVAKIIEAASAREAARKARDLTRRKSALEISSLPGKLADCQERD 429

Query: 416 PGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475
           P  SE++IVEGDSAGGSAKQ RNR+NQA+LPL+GKILNVE+ARFD+MLSS  + TLI AL
Sbjct: 430 PAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSDLIGTLILAL 489

Query: 476 GCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPL 535
           G GIGRD++N DK RYH II+M DADVDG+HIRTLLLTFF+RQMPELI RG+VYIAQPPL
Sbjct: 490 GTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELITRGHVYIAQPPL 549

Query: 536 FKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIV 595
           +KV KGKQ +YLKD++ +  YL  +      +  S G   + G  L+ LV + +   A V
Sbjct: 550 YKVSKGKQSRYLKDQAEMDAYLIEEGASEAELDLSTGERRL-GLDLQSLVREAKAFSAGV 608

Query: 596 ARLEQRYPTHITNRMLYHPMIS--NDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPV 653
            RL QR P     +     + +  +DM    A       A +   +  E     ++G P 
Sbjct: 609 DRLSQRAPAFAIEQAALAGLFAEHSDMATASAA------AAVRLNLYAEEGDGDWTGAP- 661

Query: 654 LDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDR 713
              E+   +   T  +  +    +      +S+D +R+A+  +A +G+       +R D+
Sbjct: 662 --GEQGAVV--FTRTRRAVQETIVLEETLIRSLDARRLAERASAFDGVFVAPATYRRKDK 717

Query: 714 VKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG 773
              +   ++ L   +   K+GL IQRYKGLGEMNPEQLWETT+D  +R +LQV+++    
Sbjct: 718 STTIRGPLDLLTAVLDAGKKGLSIQRYKGLGEMNPEQLWETTLDVNARTLLQVSVEHEED 777

Query: 774 ADQLFTCLMGDQVEPRREFIEANALNVA 801
           A+ LF  LMGD VEPRREFI+ NAL+ A
Sbjct: 778 ANDLFAKLMGDVVEPRREFIQDNALDAA 805