Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 364 a.a., DNA replication/repair protein RecF from Rhodanobacter sp. FW510-T8

 Score =  208 bits (529), Expect = 2e-58
 Identities = 124/359 (34%), Positives = 191/359 (53%), Gaps = 9/359 (2%)

Query: 3   LIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN 62
           L +L +   R +    ++    +N+  G NG+GKTS+LEA++ L   RSFRS   + ++ 
Sbjct: 8   LEQLRVRGLRCLGEVGVALDPALNVFTGANGAGKTSVLEAVFLLSHARSFRSGAKEALLQ 67

Query: 63  NDQDKLTLFATLNLPRGD-SKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPES 121
               +L++FA L    G   ++GL R      E K+DG  V  +  L     +    P S
Sbjct: 68  RGASQLSIFAELRHADGRVGRVGLGR-DGVRWEAKLDGANVA-IGQLVRECAVVCFEPGS 125

Query: 122 FSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQY--WDR 179
            +L+    + RR+++DWG FH + +F A W   +R LKQRN +LR+ +P D   +  W+ 
Sbjct: 126 HALIAGAAEERRRYLDWGVFHVEHEFLAGWRRYQRALKQRNSLLRSATPGDDDLFAPWEI 185

Query: 180 EFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVD-VKVSFTRGWDSKTDFAQLLESQY 238
           E  +  +Q+ + R  Y+D L   L   IG  LP++  +++ + RGW  + D A+ L  Q 
Sbjct: 186 ELAQSAQQIDQQRGAYLDLLKPKLLASIGGLLPELGALELRYRRGWPEEQDLARQLREQR 245

Query: 239 PRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDKHSI 298
            RDLA GHT  G H+AD  +     P ++ LSRGQ KL   A  +AQ +L  +   +  I
Sbjct: 246 GRDLARGHTTLGAHRADWSIAFEHAPLREHLSRGQEKLTALACMLAQAELYAEHRGEWPI 305

Query: 299 YLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPSRMFHVEHGRVT 357
             +DDL SELD  H+  ++ QL    AQV +T  E   +  +L   P+R+FHVE G +T
Sbjct: 306 VCLDDLASELDQAHQAAVVAQLAAARAQVLLTGTE---LPQALQGLPARVFHVEQGELT 361