Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 366 a.a., DNA recombination and repair protein RecF from Pseudomonas sp. S08-1

 Score =  311 bits (798), Expect = 1e-89
 Identities = 164/360 (45%), Positives = 227/360 (63%), Gaps = 3/360 (0%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           MSL R+ + + RN+    LSPS  IN+++G NGSGKTS+LEAI+ LG+ RSFRS+    +
Sbjct: 1   MSLSRVTVTAVRNLHPVTLSPSPRINILHGANGSGKTSLLEAIHLLGLARSFRSNKLLPM 60

Query: 61  INNDQDKLTLFATLNLPRG-DSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITP 119
           I  +Q   T+F  +  P G  S +G+ R R GE +++IDG+  +  + LAE LP+QVI P
Sbjct: 61  IQYEQPACTVFGQVQQPEGMHSNLGISRDRQGELQIRIDGQNARSTAQLAELLPLQVINP 120

Query: 120 ESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQY-WD 178
           +SF LL   PK RRQF+DWG FH + +F  AW  +++ L+QRN  LR+G+     Q  WD
Sbjct: 121 DSFRLLEGAPKVRRQFLDWGVFHVEQRFLPAWQRLQKALRQRNSWLRHGTLDAASQAAWD 180

Query: 179 REFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQY 238
           RE    ++++   R  Y+ +L  + + ++ E +    + +S+ RGWD +   A +L S  
Sbjct: 181 RELCLASDELDGYRRAYIQALKPVFEQVLRELVELEGLSLSYYRGWDKEKPLADVLASTL 240

Query: 239 PRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDKHSI 298
           PRD   GHT +GP +ADLRLR+G   A + LSRGQ KL+VCALRIAQG LL Q      I
Sbjct: 241 PRDQQLGHTQAGPQRADLRLRLGAHNAAEILSRGQQKLVVCALRIAQGHLLNQAKHGQCI 300

Query: 299 YLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHT-PPSRMFHVEHGRVT 357
           YLVDDLPSELD +HR+ L + L D   QVF+T ++   + D   T  P  MFHVEHG +T
Sbjct: 301 YLVDDLPSELDERHRRALCRLLDDLQCQVFITCVDQEFLKDGWRTDTPVAMFHVEHGVIT 360