Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., DNA recombination and repair protein RecF from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  322 bits (826), Expect = 7e-93
 Identities = 164/357 (45%), Positives = 231/357 (64%), Gaps = 1/357 (0%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           MSL RL I  FRNI+ A L+ S G N + G NGSGKTS+LEAIY LG GR+FRS    RV
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 61  INNDQDKLTLFATLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPE 120
           I ++Q+   L   L     ++ IGL + + G+++V+IDG    +++ LA  +P+Q+ITPE
Sbjct: 61  IRHEQEAFVLHGRLQSEERETSIGLTKDKQGDSKVRIDGTDGHKIAELAHLMPMQLITPE 120

Query: 121 SFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQYWDRE 180
            F+LL  GPK RR F+DWG FH +  F+ AW N++R+LKQRN  LR  S Y+Q++ WD+E
Sbjct: 121 GFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPWDKE 180

Query: 181 FIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR 240
            I   EQ++  R  Y  ++ + +     +FLP+  +  SF RGW+ +TD+A +LE  + R
Sbjct: 181 LIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVLERSFER 240

Query: 241 DLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDKHSIYL 300
           D    +T  GPHKAD R+R    P +D LSRGQLKLL+CALR+AQG+ L ++  +  +YL
Sbjct: 241 DRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300

Query: 301 VDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPSRMFHVEHGRVT 357
           +DD  SELD   R LL  +L  T +QVFV+AI    ++D +    S+MF VE G++T
Sbjct: 301 IDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVID-MSDENSKMFTVEKGKIT 356