Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 373 a.a., DNA replication/repair protein RecF from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 79.0 bits (193), Expect = 2e-19
 Identities = 91/349 (26%), Positives = 146/349 (41%), Gaps = 25/349 (7%)

Query: 6   LNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDQ 65
           L +  FR+   A+L  + G  +++G NG+GKT++LEAI  L  G+  R   +  +   + 
Sbjct: 5   LTLTDFRSYAGARLEMTSGPVVLHGPNGAGKTNLLEAISLLTPGKGLRGATAAEMGRREP 64

Query: 66  DKLTLFATLNLPRGDSK----IGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPES 121
            + T  A   +   D +     G++   +    V+IDGE  +    L    P+   TPE 
Sbjct: 65  GQATGRAWAVMVELDDETRLGTGVQAAGAARRIVRIDGETAQPGRLLDYLRPVWA-TPEQ 123

Query: 122 FSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQML---RNGSPYDQIQYWD 178
             L  +    R +F D   F  DP   A+     + L++R ++L   ++G   D + + D
Sbjct: 124 DRLFSDARAERLKFFDRLVFAADPDHAASVSAYEKALRERLRLLNDAQDGREADPV-WLD 182

Query: 179 REFIRYTEQVTEIRNRYVDSLNELLKGIIGEF---LPQVDVKV-----SFTRGWDSKTDF 230
               R  E         V +L+ L   I        PQ D+ +             + + 
Sbjct: 183 ALEARLGEAGARAALARVAALHALQAAIDARSDRPFPQADLGLDGAAEQMAEAGAEEDEI 242

Query: 231 A----QLLESQYPRDLATGHTVSGPHKADLRL--RVGTLPAQDALSRGQLKLLVCALRIA 284
           A    + L     RD A G ++ GPH+ DL    R    PA +  S G+ K LV  L +A
Sbjct: 243 AAAIREGLAKARARDGAAGRSLFGPHRTDLTALHREKQRPAAEG-SSGEQKALVLNLILA 301

Query: 285 QGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIE 333
           Q   L     +  I L+D+ P+ LD   R  L  ++     Q F+T  E
Sbjct: 302 QIARLSDHAAR-PILLLDEAPAHLDEARRTALFDEITALDLQAFMTGTE 349