Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 544 a.a., membrane protein insertase YidC from Pectobacterium carotovorum WPP14

 Score =  600 bits (1546), Expect = e-176
 Identities = 300/548 (54%), Positives = 393/548 (71%), Gaps = 16/548 (2%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAA 60
           M+SQRN+LLI LLFV+F+LWQ W+ DK P           NA T  + +      GVPA+
Sbjct: 1   MDSQRNLLLIALLFVTFMLWQAWETDKNPPATTQAIQQATNAVTGDATN-----QGVPAS 55

Query: 61  VAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG 120
                 LITVKTD L + IN  GGDI  A L+++    G D+PF LLE T +F Y AQSG
Sbjct: 56  --GQGKLITVKTDVLSLTINTRGGDIEQAHLLAYPDTLGSDKPFHLLETTSEFVYQAQSG 113

Query: 121 LIGRDGIDSSAKG-RAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHRGKFN 179
           L G++G D+ A G R +F  ++  F LADGQ  L +P+TY A +GVTYTK FV  RG + 
Sbjct: 114 LTGKNGPDNPANGPRPLFTTTQDSFELADGQSELRIPMTYTAADGVTYTKTFVLKRGDYA 173

Query: 180 VNIDYKINNTSAAPLQVQMYGQIKQTIK------PSESSMMMPTYRGAAFSTASVRYEKY 233
           +N+DY +NNTSA PL++ ++GQ+KQ+I+         S+  + TYRGAAFS++  +Y+KY
Sbjct: 174 LNVDYSVNNTSAQPLELTLFGQLKQSIELPKHRDTGSSNFALHTYRGAAFSSSEDKYKKY 233

Query: 234 NFEDMGKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYD 293
           +F DM +N LN  T GGW AMLQ YF +AWIP    +NT ++S    G A IGF+ A   
Sbjct: 234 SFSDMDEN-LNITTNGGWVAMLQQYFATAWIPTTAGANTFYTSKLGNGQAAIGFKSAPVV 292

Query: 294 VAPGATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNW 353
           VA G+ Q++ +  +VGP+ Q  ++A++  L+L VDYG+LW+++ P+  LL F  SF+GNW
Sbjct: 293 VAAGSQQDLKTTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKFLHSFIGNW 352

Query: 354 GVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKK 413
           G +II IT  VRG+++PLTKAQYTSMAKMR LQPKLQ ++ER GDD+Q+M Q MM LYK 
Sbjct: 353 GFSIIAITFIVRGIMYPLTKAQYTSMAKMRLLQPKLQAMRERIGDDKQRMSQEMMALYKS 412

Query: 414 EKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGVS 473
           EKVNP+GGC P+L+QMPIF+ALY++L+ S ELRHAPF LWIHDLS QDPYYILP+LMGV+
Sbjct: 413 EKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRHAPFALWIHDLSAQDPYYILPILMGVT 472

Query: 474 MFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYA 533
           MF +QKM P   T DPMQ K+M +MPVIFTVFFLWFPSGLV+Y++V N+V I+QQ++IY 
Sbjct: 473 MFFIQKMSPTTVT-DPMQQKIMTYMPVIFTVFFLWFPSGLVMYYIVSNLVTILQQQLIYR 531

Query: 534 GLEKKGLN 541
           GLEK+GL+
Sbjct: 532 GLEKRGLH 539