Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 548 a.a., inner membrane protein translocase component YidC (NCBI) from Escherichia coli BW25113

 Score =  570 bits (1469), Expect = e-167
 Identities = 288/549 (52%), Positives = 385/549 (70%), Gaps = 16/549 (2%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAA 60
           M+SQRN+L+I LLFVSF++WQ W+ DK P+P A +++      T  +A    AD GVPA+
Sbjct: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTT-----QTTTTAAGSAADQGVPAS 55

Query: 61  VAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG 120
                 LI+VKTD LD+ IN  GGD+  A L ++  E    QPF LLE +  F Y AQSG
Sbjct: 56  --GQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSG 113

Query: 121 LIGRDGIDSSAKG-RAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHRGKFN 179
           L GRDG D+ A G R ++   K  + LA+GQ+ L+VP+TY    G T+TK FV  RG + 
Sbjct: 114 LTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYA 173

Query: 180 VNIDYKINNTSAAPLQVQMYGQIKQTIK------PSESSMMMPTYRGAAFSTASVRYEKY 233
           VN++Y + N    PL++  +GQ+KQ+I          S+  + T+RGAA+ST   +YEKY
Sbjct: 174 VNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKY 233

Query: 234 NFEDMGKN-NLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVY 292
            F+ +  N NLN  + GGW AMLQ YF +AWIP    +N  +++    G+A IG++    
Sbjct: 234 KFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPV 293

Query: 293 DVAPGATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGN 352
            V PG T  ++S  +VGP+ Q  ++A++  L+L VDYG+LW+++ P+  LL +  SFVGN
Sbjct: 294 LVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGN 353

Query: 353 WGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYK 412
           WG +II+IT  VRG+++PLTKAQYTSMAKMR LQPK+Q ++ER GDD+Q++ Q MM LYK
Sbjct: 354 WGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYK 413

Query: 413 KEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGV 472
            EKVNP+GGC P+L+QMPIF+ALY++L+ S ELR APF LWIHDLS QDPYYILP+LMGV
Sbjct: 414 AEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGV 473

Query: 473 SMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIY 532
           +MF +QKM P   T DPMQ K+M +MPVIFTVFFLWFPSGLVLY++V N+V IIQQ++IY
Sbjct: 474 TMFFIQKMSPTTVT-DPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIY 532

Query: 533 AGLEKKGLN 541
            GLEK+GL+
Sbjct: 533 RGLEKRGLH 541