Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 543 a.a., membrane protein insertase YidC from Dickeya dianthicola ME23

 Score =  596 bits (1536), Expect = e-175
 Identities = 300/548 (54%), Positives = 397/548 (72%), Gaps = 17/548 (3%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAA 60
           M+SQRN+LLI LLFV+F++WQQW+ DK P P AT+++  AN     +A+      GVPA+
Sbjct: 1   MDSQRNLLLIALLFVTFMIWQQWETDKNP-PAATQTTQQANGAVGDAAN-----QGVPAS 54

Query: 61  VAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG 120
              T  LITVKTD L + IN  GGDI  A L+++  E G  QPF LLE T  FTY AQSG
Sbjct: 55  --GTGKLITVKTDVLSLNINTRGGDIEEADLLTYPAELGSSQPFKLLETTPAFTYQAQSG 112

Query: 121 LIGRDGIDSSAKG-RAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHRGKFN 179
           L G++G D+ A G R ++ A    F LA GQ+ L +PLTY   +GV++TK FV  RG++ 
Sbjct: 113 LTGKNGPDNPANGSRPLYTAPADRFELAAGQNELRIPLTYTDASGVSFTKTFVLKRGEYA 172

Query: 180 VNIDYKINNTSAAPLQVQMYGQIKQTIK-PSE-----SSMMMPTYRGAAFSTASVRYEKY 233
           +N++Y +NNTSA  L++ ++GQ+KQ+I  PS      ++  + TYRGAAFS++  +Y KY
Sbjct: 173 LNVEYAVNNTSAQQLELSLFGQLKQSIDLPSHRDTGSNNFALHTYRGAAFSSSDDKYRKY 232

Query: 234 NFEDMGKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYD 293
           +F DM K NLN  T GGW AMLQ YF +AW+P A  SNT +S+    GLA IGF+     
Sbjct: 233 SFSDM-KENLNITTQGGWVAMLQQYFATAWVPAAAGSNTFYSTNLGNGLAAIGFKATPVM 291

Query: 294 VAPGATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNW 353
           V PG+ Q +++  +VGP+ Q  ++ ++  L+L VDYG+LW+++ P+  LL F   F+GNW
Sbjct: 292 VQPGSQQNLNATLWVGPEIQDKMATVAPHLDLTVDYGWLWFISQPLFKLLKFLHGFIGNW 351

Query: 354 GVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKK 413
           G +II IT  VRG+++PLTKAQYTSMAKMR LQPKLQ ++ER GDD+Q+M Q MM LYK 
Sbjct: 352 GFSIIAITFIVRGIMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDDKQRMSQEMMALYKA 411

Query: 414 EKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGVS 473
           EKVNP+GGC P+++QMPIF+ALY++L+ S ELRHAPF LWIHDLS QDPYY+LP+LMG++
Sbjct: 412 EKVNPLGGCFPLVIQMPIFLALYYMLMGSVELRHAPFALWIHDLSAQDPYYVLPILMGLT 471

Query: 474 MFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYA 533
           MF +QKM P   T DPMQ K+M +MPVIFTVFFLWFPSGLVLY++V N+V I QQ++IY 
Sbjct: 472 MFFIQKMSPTTVT-DPMQQKIMTYMPVIFTVFFLWFPSGLVLYYIVSNLVTIAQQQLIYR 530

Query: 534 GLEKKGLN 541
           GLEK+GL+
Sbjct: 531 GLEKRGLH 538