Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 598 a.a., membrane protein insertase YidC from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  237 bits (604), Expect = 1e-66
 Identities = 165/573 (28%), Positives = 277/573 (48%), Gaps = 59/573 (10%)

Query: 6   NILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTGVP--AAVAA 63
           ++L++G+ + + L  Q  +     +  A +S    NA    +A  P+  T V   +   +
Sbjct: 16  SVLIMGIYYFAVLRPQAERRAVQQQAQAEQSQTADNAA--RTALSPQGPTFVTDRSQALS 73

Query: 64  TQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLE-QTKDFTYIAQSGLI 122
           T   + +++  L   ++  GG I    L  ++  Q K QP  L   Q     Y AQ G  
Sbjct: 74  TAARVPIQSGTLKGSLSLQGGRIDDLFLTDYREVQDKPQPVELFRPQGMQNAYFAQFGWT 133

Query: 123 GRDGIDSSAKGRAIFAASKTEFTLADGQD---SLEVPLTYVAENGVTYTKVFVFHRGKFN 179
           G + +     G        T + L +G     +  V LT+    G+ +T+V      K+ 
Sbjct: 134 GPN-VAGGVPG------PNTVWRLTNGSTLTPTTPVTLTWDNGQGLRFTRVISVD-DKYV 185

Query: 180 VNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFS---TASVRYEKYNFE 236
            ++   + N     + +  YG +++   P  +      + GA  +       R E+  ++
Sbjct: 186 FSVQDTVQNLGTQAITIAPYGSVQRQGVPPAAGSSHIVHEGAIGTFGKPGDYRTEQKKYK 245

Query: 237 DMGKN-NLNQPTIGGWAAMLQHYFVSAWIPPATDS-NTIFSSVSAGGLANI--GFRGAVY 292
           D  K   +   + GGW  +   Y+++A +P   ++  T F      G   +     G   
Sbjct: 246 DWLKEPRIENASTGGWLGITDKYWLAALLPQQNEAVETEFRVRDLNGAQQLEANVLGTTR 305

Query: 293 DVAPGATQEISSQFYVGPKDQKALSALSDTLNL-----VVDYGFLWWLAVPIHWLLMFYQ 347
            + PGAT   + + + G K  + L +   +LNL      +D+G  W+L  PI W+L    
Sbjct: 306 TIQPGATATETQRLFAGVKRAEVLKSYEQSLNLPRFVYAIDWGMFWFLTRPIFWILENVY 365

Query: 348 SFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAM 407
             VG++GVAI+ +T+ V+ ++FPL    Y SM+KMRNLQPK++++K++F DD QK  Q  
Sbjct: 366 GLVGSFGVAILALTVIVKLVMFPLANNAYASMSKMRNLQPKMEEIKKKFKDDPQKQQQET 425

Query: 408 MELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYI-- 465
           M LY++EK+NP+ GCLP++LQ+P+F ALY VL  + E+RH PF+ +IHDLS +DP  I  
Sbjct: 426 MALYQREKINPVAGCLPLVLQIPVFYALYKVLTVTIEMRHQPFLGFIHDLSARDPSSIWN 485

Query: 466 ---------------------------LPLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWM 498
                                      L +  G++M++   M P  P  DP+Q ++ Q+M
Sbjct: 486 LFGLIPWDPAMAPLIGGLLAGPLHLGLLAIAYGLTMWLQTAMNP--PAADPVQRQIFQFM 543

Query: 499 PVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKII 531
           P++FT     F +GL++YW   NI+ I+QQ +I
Sbjct: 544 PLLFTFIMAPFAAGLLIYWAWSNILTILQQYVI 576