Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 599 a.a., preprotein translocase 60 kD membrane subunit from Agrobacterium fabrum C58

 Score =  254 bits (648), Expect = 8e-72
 Identities = 168/545 (30%), Positives = 261/545 (47%), Gaps = 48/545 (8%)

Query: 21  QQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAAVAATQNLITVKTDQLDVQIN 80
           QQ    + P P A   + V  A    S       T    A+A TQ  + + T+ +   IN
Sbjct: 43  QQQTTQQQPAPGAAPGATVEGAPPASSTQAAATATR-EEAIARTQR-VAIDTNAIAGSIN 100

Query: 81  PVGGDIVYAALVSHKLEQGKDQPFVLL---EQTKDFTYIAQSGLIGRDGIDSSAKGRAIF 137
             G       L  +        P + L     TKD  Y  + G +    +          
Sbjct: 101 LTGARFDDIRLKGYHETVDDSSPIITLFSPADTKD-GYFTELGYVAAQEVGG-------V 152

Query: 138 AASKTEFTLADGQDSLE---VPLTYVAENGVTYTKVFVFHRGKFNVNIDYKINNTSAAPL 194
               T +TLA G    E   V LTY    GV +++        + ++I  K+ N   A +
Sbjct: 153 PGPTTVWTLASGDKLTETTPVTLTYTNSKGVVFSRTVSIDE-HYMLSIADKVENPGQAAI 211

Query: 195 QVQMYGQIKQTIKPSESSMMM--PTYRGAAFSTASVRYEKYNFEDMGKNNLNQPTIGGWA 252
               YG++ +  KP    + +    + G +    S+  +KY   +     + + T GGW 
Sbjct: 212 SFATYGRVTRNNKPVIPPVFVIHEGFLGVSGKDGSLTEKKYKDVEEEPVTVAKAT-GGWL 270

Query: 253 AMLQHYFVSAWIPPATDS-NTIFSSVSAGGLA-NIGFRGAVYDVAPGATQEISSQFYVGP 310
            +   Y+ +A +PP T    T +S ++    +    F+     V  G + E+ S  + G 
Sbjct: 271 GITDKYWAAAIVPPQTTPFETRYSHITGNQPSYQADFKSDSMTVEAGQSIELKSLVFAGA 330

Query: 311 KDQKALSALSDT-----LNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVR 365
           K+   +            +L++D+G+ +++  P+  ++ F+  + GN+GVAI+L T+ V+
Sbjct: 331 KEVPLVDRYETEYSVPKFDLLIDWGWFYFITKPMFKMMDFFFRYFGNFGVAILLTTIVVK 390

Query: 366 GLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPMGGCLPI 425
            L FPL   QY SMA M+ +QPK+++LK + GDDR  M QAMM+LYK+EK+NP+ GC P+
Sbjct: 391 ALFFPLASKQYASMANMKRMQPKMEELKAKHGDDRMAMQQAMMQLYKEEKINPVAGCWPM 450

Query: 426 LLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYIL------------------- 466
           LLQ+P+F ALY V+  + E+RHAPF  WIHDLS  DP  +                    
Sbjct: 451 LLQIPVFFALYKVIYVTIEMRHAPFFGWIHDLSAPDPTSLFNLFGLLPYDVPHFLMIGVW 510

Query: 467 PLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAII 526
           PL+MG++MF+  +M P  P  DP Q  +  WMP+IFT     FP+GLV+YW   N ++I 
Sbjct: 511 PLVMGITMFLQMRMNPTPP--DPTQAMIFTWMPLIFTFMLASFPAGLVIYWAWNNTLSIS 568

Query: 527 QQKII 531
           QQ +I
Sbjct: 569 QQALI 573