Pairwise Alignments

Query, 1389 a.a., DNA-directed RNA polymerase subunit beta from Lysobacter sp. OAE881

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta (NCBI) from Escherichia coli BW25113

 Score = 1867 bits (4836), Expect = 0.0
 Identities = 942/1380 (68%), Positives = 1127/1380 (81%), Gaps = 41/1380 (2%)

Query: 9    YSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLHAALKSVFP 68
            YS+TEKKRIRKDFGKR  +L+VP+LL+IQ+DS+++F+++  DP      GL AA +SVFP
Sbjct: 3    YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ--DP--EGQYGLEAAFRSVFP 58

Query: 69   IVSYSGNAALEYVGYKLGEPPFDERECRNRGLSYGAPLRVTVRLVIYDRESSTKAIKYVK 128
            I SYSGN+ L+YV Y+LGEP FD +EC+ RG++Y APLRV +RLVIY+RE+    +K +K
Sbjct: 59   IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118

Query: 129  EQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIP 188
            EQEVYMGEIPLMT+NGTF++NGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARIIP
Sbjct: 119  EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178

Query: 189  YRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLREFFEVNTFHIDPNEGV 248
            YRGSWLDFEFDPKD LF RIDRRRKLP T++LRAL Y  E++L  FFE   F I  N+ +
Sbjct: 179  YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-L 237

Query: 249  QLELVPERLRGETLNFDLADGEKVIVEAGRRITARHVKQLEQAGVAALAVPDEYLVGRIL 308
            Q+ELVPERLRGET +FD+    KV VE GRRITARH++QLE+  V  + VP EY+ G+++
Sbjct: 238  QMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297

Query: 309  SHDVVDTKSGELLATANDEITEDHLVAFRKAGIETVGTLWVNDLDRGAYLSHTLRIDATK 368
            + D +D  +GEL+  AN E++ D L    ++G + + TL+ NDLD G Y+S TLR+D T 
Sbjct: 298  AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357

Query: 369  TQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRLGRKETEGA 428
             +L ALVEIYRMMRPGEPPT++AA++LF NLFF+ +RYDLSAVGRMKFNR L R+E EG+
Sbjct: 358  DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417

Query: 429  SVLYDAKYFAERKDEESVRLRGECGNTSDILDVIRVLTEIRNGRGTVDDIDHLGNRRVRS 488
             +L                      +  DI+DV++ L +IRNG+G VDDIDHLGNRR+RS
Sbjct: 418  GIL----------------------SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455

Query: 489  VGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFM 548
            VGEMAEN FRVGLVRVERAVKERLS+ + + L PQ++INAKP++AA+KEFFGSSQLSQFM
Sbjct: 456  VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515

Query: 549  DQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSL 608
            DQNNPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVC IETPEGPNIGLINSL
Sbjct: 516  DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575

Query: 609  AVFARTNKYGFLETPYRKVVDGRVTDDVEYLSAIEENEYVIAQANAPQDEKGTITAQFVA 668
            +V+A+TN+YGFLETPYRKV DG VTD++ YLSAIEE  YVIAQAN+  DE+G      V 
Sbjct: 576  SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635

Query: 669  CRYQGESMLRPPNEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRA 728
            CR +GES L   +++ +MDVS  Q VSV A+L+PFLEHDDANRALMGANMQRQAVPTLRA
Sbjct: 636  CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695

Query: 729  QKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNESEIVGETDAGVDIYTLI 788
             KPLVGTG+ERAVA DSGVT  A+RGGV++ +DA RIV+KVNE E+    +AG+DIY L 
Sbjct: 696  DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY-PGEAGIDIYNLT 754

Query: 789  KYTRSNQNTCINQRPLVNVGDVVARGDVLADGPSTDIGELALGQNMLVAFMPWNGYNFED 848
            KYTRSNQNTCINQ P V++G+ V RGDVLADGPSTD+GELALGQNM VAFMPWNGYNFED
Sbjct: 755  KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814

Query: 849  SILLSERVVEQDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIG 908
            SIL+SERVV++DR+TTIHI+EL CV+RDTKLGPEEI+ADIPNV E AL++LDESG+VYIG
Sbjct: 815  SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874

Query: 909  AEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQVF 968
            AEV  GDILVGKVTPKGE+QLTPEEKLLRAIFGEKASDVKDSSLRVP G+ GTVIDVQVF
Sbjct: 875  AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934

Query: 969  TRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLKSQLVGRIANGGGGLKKGD 1028
            TRDG+EKDKRA +IEE ++++ KKD  ++ +ILEA ++ R+++ LV     GG   +K  
Sbjct: 935  TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA----GGVEAEK-- 988

Query: 1029 TVTSLVLDGLSRKDWFTLRMKDDEAVEAIERAQKQIEVHKAEFEKRFADKRGKITQGDDL 1088
                  LD L R  W  L + D+E    +E+  +Q +  K EFEK+   KR KITQGDDL
Sbjct: 989  ------LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042

Query: 1089 APGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVQDMPYAADGQTVDIVLNPLG 1148
            APGVLK+VKV+LAVKRRIQPGDKMAGRHGNKGV+S I P++DMPY  +G  VDIVLNPLG
Sbjct: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102

Query: 1149 VPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQQAIGELRKFLNDIYNHDNSVVGERVDL 1208
            VPSRMNIGQILE HLG AAKG+G KI  ML+ QQ + +LR+F+   Y+   + V ++VDL
Sbjct: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL-GADVRQKVDL 1161

Query: 1209 TQFTDEELLRLAKNLTDGVPMATPVFDGAAESEIKRMLELADLPSSGQTELFDGRTGEAF 1268
            + F+DEE++RLA+NL  G+P+ATPVFDGA E+EIK +L+L DLP+SGQ  L+DGRTGE F
Sbjct: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221

Query: 1269 ERKVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1328
            ER VTVGYM+MLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
Sbjct: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281

Query: 1329 GAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLAINMELEE 1388
            GAAYTLQEMLTVKSDDV GR +MYKNIVDG ++M  GMPESFNVL+KEIRSL IN+ELE+
Sbjct: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341