Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

Subject, 578 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  441 bits (1134), Expect = e-128
 Identities = 249/564 (44%), Positives = 347/564 (61%), Gaps = 23/564 (4%)

Query: 22  LPPLLQRLYASRGVRSAQELERGVKGMLPWSQLTGVEKAVEILYGAFKQGLHIVVVGDFD 81
           L PLL RL+A+RG+ S  EL+  +  +LP S + G + A   L  A     +I +V D+D
Sbjct: 21  LHPLLARLFAARGITSKDELDDALARLLPPSSMLGAQDAARALADAMAAQKNICIVADYD 80

Query: 82  ADGATSTALSVLALRALG----YGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQLIMTVD 137
            DGAT+ A+ +  LR LG    +  V+YLVP+R  DGYGL+P +  +  A+GA +++TVD
Sbjct: 81  CDGATACAVGLRGLRLLGAPLGFDRVNYLVPDRVTDGYGLTPSIATRVKAQGADVLVTVD 140

Query: 138 NGISSHAGVDHAHALGIPVLVTDHHLPG-----DSLPAAEAIINPNLRDCEFPSKSLAGV 192
           NGI+S  GV  A  LG+ V+VTDHHLP       +LP    I+NPN   C F SKS+AGV
Sbjct: 141 NGIASVDGVRAARELGLAVIVTDHHLPALKNGEIALPQDCIIVNPNQPGCPFESKSIAGV 200

Query: 193 GVAFYLMLALRTFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGL 252
           GV FY++LALR  LR++G F  +    P +  LL LVALGTVADVV LDANNR L  QGL
Sbjct: 201 GVMFYVLLALRAELRERGVFTAQN--QPKIDTLLPLVALGTVADVVKLDANNRRLVAQGL 258

Query: 253 SRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNT 312
            R+RAG   PG+ AL   A R P      D GFALGPRLNAAGRL DM++G+  L  D+ 
Sbjct: 259 KRVRAGAMPPGMVALFNAAARKPAAATGFDFGFALGPRLNAAGRLADMTLGIECLTTDDG 318

Query: 313 GEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAMYHPQWHQGVVGI 372
             A  LA  LD +N+ RK IE  M+ +AL + E++    E  P  L ++ P +H+GVVGI
Sbjct: 319 LRADELARTLDGINRERKAIEGDMREQALQMAEEMFDESEEPPPALVVFDPDFHEGVVGI 378

Query: 373 LASRIKERFHRPVIAFAPTG----DGTLKGSGRSIQGLHMRDALERLDTLYPGLIMKFGG 428
           +ASR+K++ HRP   FA +G    +  LKGSGRSI G H+RDAL+ +   +PG++++FGG
Sbjct: 379 VASRLKDKLHRPTFVFAASGAEGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGG 438

Query: 429 HAMAAGLSLEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSMEVAQMLRDA 488
           HAMAAG +++E + E F+    ++  EWLD A LQ  + +DGPL       ++   L   
Sbjct: 439 HAMAAGCTIDEEQLETFEAALQQVAHEWLDAATLQRRMEADGPLDTKYRRADLVDTLHQE 498

Query: 489 GPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSLWPDNGVR 548
             WGQ F  P+F     ++ QRLVGE+HL + ++    G  +DGI F     L       
Sbjct: 499 -VWGQGFAPPVFCEEVVVVSQRLVGEKHLALKLK--HQGEPVDGIWFGHTEPL-----PA 550

Query: 549 EVQLAYKLDINEFRGNRSLQLIID 572
            V++A++LD +E++G R ++ +++
Sbjct: 551 RVKIAFRLDADEWQGQRRVRFLVE 574