Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

Subject, 560 a.a., Single-stranded-DNA-specific exonuclease RecJ from Methylophilus sp. DMC18

 Score =  503 bits (1296), Expect = e-147
 Identities = 282/573 (49%), Positives = 376/573 (65%), Gaps = 16/573 (2%)

Query: 1   MKQQIQLRRREAVDGVDLPADLPPLLQRLYASRGVRSAQELERGVKGMLPWSQLTGVEKA 60
           MK Q +     A++G+     LPPL+ RL A+RGV SA    + +  +L    LTG  + 
Sbjct: 1   MKIQQRTYDIAALEGLQAQG-LPPLMARLLAARGVTSADWGLQDMPHLLKPEALTGAAEM 59

Query: 61  VEILYGAFKQGLHIVVVGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPE 120
              L  A  Q   I+++GD+DADGAT+T++++  LR +G   V +LVPNRFE GYGL+PE
Sbjct: 60  ARQLADAIAQQQRILIIGDYDADGATATSVAMRGLRMMG-AEVDFLVPNRFEYGYGLTPE 118

Query: 121 VVDQAHARGAQLIMTVDNGISSHAGVDHAHALGIPVLVTDHHLPGDSLPAAEAIINPNLR 180
           +V  A  R  Q+++TVDNGI+S  GV  A ALG+ VL+TDHHLP +  PAA+ I+NPN R
Sbjct: 119 IVALAATRQPQVLLTVDNGIASIEGVAAAKALGLRVLITDHHLPAEQTPAADCIVNPNQR 178

Query: 181 DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPL 240
            C FPSK LAGVGV FY+++ALR  L+ +G   E  +   +L  LLDLVALGTVAD+V L
Sbjct: 179 GCGFPSKHLAGVGVMFYVLIALRAELKQRGQLAEDQV---HLGRLLDLVALGTVADLVRL 235

Query: 241 DANNRILTWQGLSRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDM 300
           DANNRIL  QGL RIR G+  PGI+A+L++A RDPQ+++A DLGF +GPRLNAAGRLDDM
Sbjct: 236 DANNRILVRQGLKRIRQGQACPGIQAILKLAGRDPQQVSAQDLGFYVGPRLNAAGRLDDM 295

Query: 301 SVGVALLLCDNTGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAM 360
           ++G+  LL D   EA   A +L  LN  RK+IE  MQ +A+     L +        +++
Sbjct: 296 TIGIRCLLADTPQEAMQYAQQLHRLNAERKQIEAEMQFDAMA---DLNQDFRPEQYTISV 352

Query: 361 YHPQWHQGVVGILASRIKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYP 420
           + P WHQGV+GILASRIKERFHRPVI FA  GDG +KGSGRSI GLH+RDAL+ +    P
Sbjct: 353 FQPDWHQGVIGILASRIKERFHRPVIVFADAGDGLIKGSGRSIAGLHLRDALDLVTKQQP 412

Query: 421 GLIMKFGGHAMAAGLSLEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSME 480
            LI+KFGGHAMAAGLS+    F  FQQ F ++V   +   +LQ  + +DG L   EMS++
Sbjct: 413 DLIVKFGGHAMAAGLSVRAEDFSRFQQAFEQVVQSLISAEVLQEMLETDGGLAPNEMSLQ 472

Query: 481 VAQMLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTS 540
            A++L     WGQ FP+P+F  +F +L Q+L+ E+HLK+ ++        D I F     
Sbjct: 473 TAELLTQ-HVWGQGFPQPVFYDQFDVLSQKLLAEKHLKLRLQK--HNQQFDAIYFQHAEP 529

Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQLIIDH 573
           L       +V LAY L +NE+ G+RS+QL + H
Sbjct: 530 L-----PEQVALAYSLQVNEYNGHRSVQLQVVH 557