Pairwise Alignments

Query, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

Subject, 362 a.a., ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) from Pseudomonas sp. S08-1

 Score =  202 bits (514), Expect = 1e-56
 Identities = 116/336 (34%), Positives = 188/336 (55%), Gaps = 19/336 (5%)

Query: 6   RHLLAAGALAVGMSAAHADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETM 65
           + LLAA    + ++       + L  YNW +Y+ P  L QF +++GIK+ Y  +++NE +
Sbjct: 2   KKLLAATLCGLTLAGTAQAADRELKVYNWFDYITPETLTQFKQDSGIKLTYDIFDTNEAL 61

Query: 66  YAKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEMLN--KPFDPNN 123
            AKL T   G YDLVVPS  F+ K  + G+ QK+D+S L N+ +LDP+++   +  DP N
Sbjct: 62  EAKLLTGNSG-YDLVVPSNVFLAKQVEAGVFQKLDRSLLPNWQHLDPQLMKLIEANDPGN 120

Query: 124 DYSIPYIWGATAIGINSDEIDPKT-----VTSWADLWKPEYKSSL-----LLTDDAREVF 173
            Y++PY++G   IG N D++         V SW  ++K E  + L      L D   E+ 
Sbjct: 121 QYAVPYMYGTVLIGFNPDKVKAALGADAPVDSWDLIFKEENIAKLKDCGVALLDSPSEIL 180

Query: 174 QVALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGS- 232
            +AL  LG   N+T+P +   A   L K+ P+V  F+S    +    GE+ + + ++GS 
Sbjct: 181 PLALHYLGLPPNSTEPADYTKAEQLLSKIRPHVRYFHSSKYMSDIANGEICVAVGYSGSF 240

Query: 233 ---AWVARQA--GTPLEVVWPKEGGIFWMDSLSIPANAKNVDGALKLINFLLRPEIAKQV 287
              A  A+QA  G  +++  PKEG   W D ++IP +AKN+  A + INFLL+P++   +
Sbjct: 241 SQAANNAKQAKNGVTVDMRLPKEGAPIWFDMMAIPKDAKNIAEAHEFINFLLQPQVIAPI 300

Query: 288 AETIGYPTPNLAARKMLSPEVANDKSLYPDAATIQK 323
           ++ +GYP PN  A  +++  +  + +LYP A  +QK
Sbjct: 301 SDFVGYPNPNKDATALVAEAIRTNPNLYPTAEAMQK 336