Pairwise Alignments

Query, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

Subject, 364 a.a., Putrescine ABC transporter putrescine-binding protein PotF from Pseudomonas sp. S08-1

 Score =  216 bits (550), Expect = 7e-61
 Identities = 124/335 (37%), Positives = 183/335 (54%), Gaps = 19/335 (5%)

Query: 6   RHLLAAGALAVGMSAAHADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETM 65
           R  L A A+A+G+S   A    TL+ YNW++Y+    L  F K +GIK +Y  ++SNET+
Sbjct: 6   RRTLTAVAVALGLSGV-AQAESTLHIYNWSDYIGETTLADFEKASGIKPVYDVFDSNETL 64

Query: 66  YAKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEMLNK--PFDPNN 123
             KL   + G YD+VVPS +F+ K  K G  QK+D+S L N+ NLDP +L +    DP N
Sbjct: 65  EGKLLAGRSG-YDIVVPSNHFLGKQIKAGAFQKLDRSLLPNWQNLDPALLKQLEANDPGN 123

Query: 124 DYSIPYIWGATAIGINSDEIDP----KTVTSWADLWKPEYKSSL-----LLTDDAREVFQ 174
            YS+PY+WG   IG N +++        + SWA L++PE    L        D   E+F 
Sbjct: 124 QYSVPYLWGTNGIGYNVEKVKAVLGIDKIDSWAVLFEPENLKKLSACGVAFMDSPDEMFP 183

Query: 175 VALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAW 234
             L  LG    +T+P + + A  +L  L P V  F+S         G++ +   ++G  +
Sbjct: 184 SVLNYLGLDPRSTNPDDYKKAEEKLLALRPYVTYFHSSKYIGDLANGDICVAFGYSGDVF 243

Query: 235 VA----RQAGTPLEVVW--PKEGGIFWMDSLSIPANAKNVDGALKLINFLLRPEIAKQVA 288
            A     +AG  +E+ +  PKEG   W D L+IPA+AKNV  A   IN+LL P +  +V+
Sbjct: 244 QAASRAEEAGKGIEIAYSIPKEGANLWFDMLAIPADAKNVKEAHAFINYLLDPAVIAKVS 303

Query: 289 ETIGYPTPNLAARKMLSPEVANDKSLYPDAATIQK 323
           + +GY  PN  A +++  EV ND S+YP  A + K
Sbjct: 304 DYVGYANPNPKAGELMDQEVRNDPSVYPSQAVLDK 338