Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECOR38

 Score = 2111 bits (5469), Expect = 0.0
 Identities = 1055/1148 (91%), Positives = 1100/1148 (95%)

Query: 1    MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIR 60
            MPEQYRY+LPVKAG+QR LGELTGAACATLVAE+AERH GPVVLIAPDMQNALRL+DEI 
Sbjct: 17   MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 76

Query: 61   QFTDSMVAGLADWETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPH 120
            QFTD MV  LADWETLPYDSFSPHQDIISSRL+TLYQLPTM+RGVLI+PV+TLMQRVCPH
Sbjct: 77   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 136

Query: 121  NFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180
            +FLHGHALVMKKGQRLSRDALR QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE PY
Sbjct: 137  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 196

Query: 181  RLDFFDDEIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRD 240
            RLDFFDDEIDSLR+FDVDSQRTLEEV  INLLPAHEFPTD+AAIELFRSQWRD FEVKRD
Sbjct: 197  RLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 256

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETR 300
             EHIYQQVSKGTLPAGIEYWQPLFF+EPLPPLFSYFPA TL+VNTGDLE SAERFQ +T 
Sbjct: 257  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 316

Query: 301  ARFENRGVDPMRPLLPTEQLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLHE 360
            ARFENRGVDPMRPLLP + LWLR DELFSELK WPRVQLKTE L  KAAN NLG+QKL +
Sbjct: 317  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 376

Query: 361  LAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATA 420
            LA+QAQ KAPLD LR+FLESF GPV+FSVESEGRREALGE+LARIKIAP+ I+RL+EA+ 
Sbjct: 377  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 436

Query: 421  NGRYLMIGAAEHGFIDSQRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480
             GRYLMIGAAEHGF+D+ RNLALICESDLLGERVARRRQDSRR INPDTLIRNLAELHIG
Sbjct: 437  RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIG 496

Query: 481  QPVVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QPVVHLEHGVGRYAGMTTLEAGGI GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
Sbjct: 497  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 556

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFE 600
            PLHKLGGDAW+RARQKAAEKVRDVAAELLDIYAQRAAK G+AFKHD+EQYQLFCD FPFE
Sbjct: 557  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 616

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV+NHKQVAVLVPTTL
Sbjct: 617  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 676

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKL 720
            LAQQH+DNFRDRFANWPVRIEM+SRFRSAKEQ QIL +VAEGKIDILIGTHKLLQ DVK 
Sbjct: 677  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 736

Query: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            +DLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 737  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 796

Query: 781  ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840
            ARRLAVKTFVREYD+LVVREAILRE+LRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
Sbjct: 797  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 856

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 857  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 916

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 917  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 976

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            E+QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
Sbjct: 977  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1036

Query: 1021 NTRLSFYKRVASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLES 1080
            NTRLSFYKR+ASAK ENELEEIKVELIDRFGLLPDPAR LLDIARLRQQAQKLGIRKLE 
Sbjct: 1037 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1096

Query: 1081 NEKGGTIEFNEKNNVNPVWLISLLQKQPQHYRLDGPTRLKFMQDLAERKTRMEWVRQFMR 1140
            NEKGG IEF EKN+VNP WLI LLQKQPQHYRLDGPTRLKF+QDL+ERKTR+EWVRQFMR
Sbjct: 1097 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1156

Query: 1141 QLEENATA 1148
            +LEENA A
Sbjct: 1157 ELEENAIA 1164