Pairwise Alignments

Query, 348 a.a., integrase from Klebsiella michiganensis M5al

Subject, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 46/335 (13%)

Query: 19  GRSGRRVRKQFATKGEALVFERHMIDEADAKPWL--GESV-------DRRTLKDVVELWF 69
           G    R R+ FAT+ EA   E   +      P    GE          R+TL++  +L F
Sbjct: 15  GSRNDRYRQTFATEEEAKADEARELARRATLPKAVRGEGTGTISPLKSRKTLQEAYDLTF 74

Query: 70  KLHGK--------SLTAGEHVYDKLVLMVDALGNPLATDLSSKLFAHYRDKRLTGEIYFS 121
           +L  K        +L  G  +     L  D L + + T+  +++   + D          
Sbjct: 75  RLEWKGGKSEKTMTLNGGNVLK---ALGADTLLSDITTEAITEMVLEFEDL--------- 122

Query: 122 EKWRKGASPVTINLEQSYLSSVFSELARLGEWAAPNPLENIRKFTIAEKEMAWLTHEQIN 181
                G S  T+N + S LS V         W    P    RK    +  + W+  E+  
Sbjct: 123 -----GNSGSTVNRKLSLLSMVLKTAVN-HNWLLSVPRMIRRKE--GKHRIRWMNTEEEG 174

Query: 182 ELLYDCQRQSA-LLALVVKICLSTGARWREAVNLTRSQVTKYRITFV--RTKGKKNRSIP 238
            +L  CQ      L   + + + TG R  E + L+     +  I     +TK    R+IP
Sbjct: 175 NVLKACQHLGLNCLHDFIIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIP 234

Query: 239 ----ISKELYEEIIALDGFKFFTDCYFQFLSVMDKASIVLPRGQ--LTHVLRHTFAAHFM 292
               +++ L+   + L  F+  T    +      +A + +      + H+LRHT A+  +
Sbjct: 235 ATSRVARILHRRRMNLTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLV 294

Query: 293 MSGGNILALQKILGHHDIKMTMRYAHLAPDHLETA 327
             G  + ++Q  +GH +I  T+RYAHLAP++L  A
Sbjct: 295 QRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQA 329