Pairwise Alignments

Query, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

Subject, 944 a.a., UvrABC system protein A from Pseudomonas sp. DMC3

 Score = 1459 bits (3778), Expect = 0.0
 Identities = 703/940 (74%), Positives = 834/940 (88%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +DKI +RGARTHNLKNI+L +PRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   LDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHNKTLENLAGQGYIRARID 180
           PDHD+PL AQTVSQMVD VL+QPEG +LMLLAP+I+ERKGEH    E L  QG++RAR++
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVN 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLSTRLAESFETALELSGGTAIVANMDDP 240
           G +C+L + PKL+ QKKH+I+V++DRFKVR DL  RLAESFETAL+L+ G A+VA MDD 
Sbjct: 181 GRICELDELPKLDKQKKHSIDVIVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVIQNPEL 300
             EE++FSA FACPICG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD +R++ N EL
Sbjct: 241 PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGEL 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLAEHYEFDVEAPWGTLNSSVQKVVLYGSGKENIEFKY 360
           +LA GAIRGWDRRN YYFQML SLA HY+F ++ P+  L++  QK +L+GSG +N++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLASHYKFSLDKPFNDLSAEQQKFILHGSGSQNVDFKY 359

Query: 361 MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCTSCEGTRLKREARH 420
           +NDRGD   R HPFEG++ N+ERRY+ETES++VREELAKF+S++ C  C GTRL+REARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSHQACPDCRGTRLRREARH 419

Query: 421 VFVENTPLPTISDMSIGHAMDFFNNLKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLTL 480
           V+V    LP ++++ IG A ++F  LK++G+R +IA+K+LKEI +RL+FLVNVGL+YL+L
Sbjct: 420 VWVGEKTLPAVTNLPIGDACEYFGALKMTGRRGEIADKILKEIRERLQFLVNVGLDYLSL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT 540
            RSA+TLSGGEAQRIRLASQIGAGLVGV+Y+LDEPSIGLHQRDN+RLLGTL HLR++GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMAVPESLTGQFMSGKRKIEV 600
           VIVVEHDEDAIR AD+V+DIGPGAGVHGG++VAEG  +++MA P+SLTG+++SG+ KIEV
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLSGRVKIEV 599

Query: 601 PKQRVPANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           P +R P N +  L L GARGNNL++V L +P+GL TC+TGVSGSGKSTLIN+TLFP++  
Sbjct: 600 PAKRTPRNKKLNLSLKGARGNNLRNVDLDIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 661 QLNGATIAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE 720
            LNGAT  E A +  ++GLEH DKV+DIDQSPIGRTPRSNPATYTG+FTP+RELFAGVPE
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 721 SRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SRSRGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPDIYVPCD CK KRYNRETLEIKY
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK+IHE L+MTIEEAREFFDAVPALARKLQTLMDVGL+YI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKSIHETLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADW 900
           +RELSKR TG+TLYILDEPTTGLHFADIQQLL+VLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940
           +VDLGPEGGS GG+I+ +GTPE VAE + S+T  +LKP+L
Sbjct: 900 LVDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLL 939



 Score =  142 bits (359), Expect = 8e-38
 Identities = 80/193 (41%), Positives = 112/193 (58%), Gaps = 15/193 (7%)

Query: 763 CDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARK------------- 809
           C  C+G R  RE   +    KT+  V ++ I +A E+F A+    R+             
Sbjct: 405 CPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACEYFGALKMTGRRGEIADKILKEIRE 464

Query: 810 -LQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADI 868
            LQ L++VGL Y+ L +SA TLSGGEAQR++LA ++     G  LYILDEP+ GLH  D 
Sbjct: 465 RLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVG-VLYILDEPSIGLHQRDN 523

Query: 869 QQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECE 928
            +LL  L  LRD GNT++V+EH+ D I+ AD++VD+GP  G  GG I+  GTP+ V    
Sbjct: 524 DRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMAHP 583

Query: 929 ASYTARFLKPMLK 941
            S T ++L   +K
Sbjct: 584 DSLTGKYLSGRVK 596