Pairwise Alignments

Query, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

Subject, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 564/958 (58%), Positives = 729/958 (76%), Gaps = 24/958 (2%)

Query: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPDH 123
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P  P  
Sbjct: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPAT 126

Query: 124 DVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHNKTLENLAGQGYIRARIDGEV 183
            +P+ +QTVSQMVD +L+  EG RL +LAPI++ RKGE+ K L  L  +G+ R ++DG+ 
Sbjct: 127 GLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVDGQF 186

Query: 184 CDLSDPPKLELQKKHTIEVVIDRFKVRDDLSTRLAESFETALELSGGTAIVANMDDPKA- 242
            +++D P L+ + KH I+VV+DR  VR D++ RLA+S ET L+L+ G AI    D P   
Sbjct: 187 YEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFADKPLPP 246

Query: 243 -----------------EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGV 285
                            E +LFS  FACP+ G+++ E+EPRLFSFNNP GACP+CDGLG 
Sbjct: 247 EDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGS 306

Query: 286 QQYFDPERVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLAEHYEFDVEAPWGTLNSSVQ 344
           QQ  D   ++  P  +L  GAI  W + +  YY Q L++L + + F + + W  L+   Q
Sbjct: 307 QQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQ 366

Query: 345 KVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNR 404
             +L G+  + IEF Y +        ++ FEG++ N+ERR+KET+S+  REE+ +++S  
Sbjct: 367 HAILQGTD-DKIEFNYQDGARSYKTVKN-FEGIVPNLERRWKETDSAWAREEIERYMSAA 424

Query: 405 PCTSCEGTRLKREARHVFVENTPLPTISDMSIGHAMDFFNNL--KLSGQRAQIAEKVLKE 462
           PC +C G RLK EA  V +    +  ++ MSI  A D+F  L   L+ ++ +IA ++LKE
Sbjct: 425 PCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVRILKE 484

Query: 463 IGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 522
           I +RL+FL +VGL+YL+LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQR
Sbjct: 485 IRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 544

Query: 523 DNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMA 582
           DN RLL TL HLR++GNTVIVVEHDEDAI  AD+V+DIGP AG+HGGQV+AEG  +D+MA
Sbjct: 545 DNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQDVMA 604

Query: 583 VPESLTGQFMSGKRKIEVPKQRVPANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVS 642
            P+SLTG+++SG+  + VP +R      + +K+ GARGNNL++VT  +P+G+FT +TGVS
Sbjct: 605 NPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAVTGVS 664

Query: 643 GSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPA 702
           G GKST + +TL+  A R++ GA    PA +  + G E  DKVIDIDQSPIGRTPRSNPA
Sbjct: 665 GGGKSTFLIETLYKSAARRVMGAREI-PAEHDRIDGFEFIDKVIDIDQSPIGRTPRSNPA 723

Query: 703 TYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVP 762
           TYTG FTP+R+ FAG+PE+++RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV 
Sbjct: 724 TYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 783

Query: 763 CDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIR 822
           CD C GKRYNRETL++ +KGK+I +VLDMT+EE  EFF AVPA+  KLQ+L DVGL YI+
Sbjct: 784 CDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIK 843

Query: 823 LGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQG 882
           +GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+ +LLE+LH L +QG
Sbjct: 844 VGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHALVEQG 903

Query: 883 NTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940
           N++VVIEHNL+VIKTADWI+D+GPEGG+GGGE++ +GTPE + + E SYT  FLK +L
Sbjct: 904 NSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKELL 961



 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 611 KVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIA-- 668
           K + + GAR +NLK + L LP      +TG+SGSGKS+L  DT++   QR+   +  A  
Sbjct: 5   KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64

Query: 669 ----EPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA--GVPESR 722
               E     DV  ++     I I+Q    R PRS   T T ++  +R LFA  GVP S 
Sbjct: 65  RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSP 124

Query: 723 SRG 725
           + G
Sbjct: 125 ATG 127



 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 3   KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           +I+V GAR +NL+N+   +P      VTG+SG GKS+   +TLY    RR + +    A 
Sbjct: 634 EIKVFGARGNNLQNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPA- 692

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPR 119
                 E   +D  E +   I I+Q      PRS   T T     +R  +A + E +
Sbjct: 693 ------EHDRIDGFEFIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743