Pairwise Alignments

Query, 366 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Klebsiella michiganensis M5al

Subject, 449 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pectobacterium carotovorum WPP14

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 37/325 (11%)

Query: 44  YRMRAEFRLWHDGDDLYHIMFDQQTKSRIRVDTFPAASELINQLMAAVIEGVRDNPVLRH 103
           YR RA   L+    +   +M  +Q+ S   VD    A  ++   + A+++ +RD      
Sbjct: 138 YRRRARLALYFQAKEQRLLMGYRQSNSHDLVDI--KACPVLRPELEALLQPLRDC----- 190

Query: 104 KLFQVDYLTTLSNQAVIS-----LLYHKKLDDEWRQQAERFRDALRAQNLNVHLIGRATK 158
            L ++  +  L +  ++      LL  + LD       +  RD  + Q ++V+L   A  
Sbjct: 191 -LSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHSSDQQALRDFAQQQGVSVYLAPDADS 249

Query: 159 -TKIELDQDYIDERLPVGGREMIYRQVENSFTQPNAAMNVQMLEWAIDATKDATGD-LLE 216
            T+++ ++        V G  + +      F Q N A+N QM+  A+        D +L+
Sbjct: 250 LTRLQGEEPVYH----VAGLTLAFSP--RDFIQVNDAVNQQMVAQALAWLDVQPQDRILD 303

Query: 217 LYCGNGNFSLALARNFERVLATEIAKPSVAAAQYNIAANHIDNVQIIRMSAE-EFTQAMN 275
           L+CG GNF+L LA+    V+  E     V   + N   N + NV     + E + TQ   
Sbjct: 304 LFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPW 363

Query: 276 GVRQFNRLQDIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCQNLE 334
             + F++             I +DP R+G     E++ +  P R++Y+SCN  TL ++ +
Sbjct: 364 AAQGFDK-------------ILLDPARAGAAGVMEQITRLAPERVVYVSCNATTLARDSK 410

Query: 335 T-LSETHEIARLALFDQFPYTHHME 358
             L+  + +A +A+ D FP+T H+E
Sbjct: 411 VLLAAGYRLANVAMLDMFPHTGHLE 435