Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  521 bits (1341), Expect = e-152
 Identities = 307/659 (46%), Positives = 407/659 (61%), Gaps = 60/659 (9%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDE 84
           +  IK+L+   +++GY+T  ++N+ LP+D    +Q+ED++  ++DMG+NV E     +  
Sbjct: 8   QSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDSL 67

Query: 85  QPEDDTPDEVDSSDKDDEPFEIAKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKR 144
              D   DE  +   ++    +A  +  + RT DPVRMY+REMG VELL+REGEI IAKR
Sbjct: 68  MLADADTDEAAA---EEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKR 124

Query: 145 IEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREILD--LDAMLSKGPSAEQVEGA 202
           IE G   ++  +   P T + I+     +     +L ++L   +D      P A +V   
Sbjct: 125 IEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAEVPPP 184

Query: 203 EDDDSGEISEKTAGASFKEEEEPEEASADEDDELTERRAPRISDEEEEDNTLSLAQMEET 262
            D        K A A    E++  EAS D++DE+     P I+                 
Sbjct: 185 VD-------AKAAKADDDTEDDDAEASGDDEDEVESGPDPIIA----------------- 220

Query: 263 LKPQALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEVES--- 319
                                   QR  A++   E+T    KK+ +  ++  AE+ +   
Sbjct: 221 -----------------------AQRFGAVSDQMEITRKALKKHGRANKQAIAELVALAE 257

Query: 320 ----VQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAERH-KVNRKDFLDRYMGHELDES 374
               ++    + E LV+++ S   RL A    +++L  R  ++ R DFL ++ G+E+DES
Sbjct: 258 LFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMPRADFLRQFPGNEVDES 317

Query: 375 FIASVEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARI 434
           +  ++ K   K+A         + R + +++ +  +TG+ + E + I   +  GE +AR 
Sbjct: 318 WTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEIKDINRRMSIGEAKARR 377

Query: 435 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 494
           AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 495 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKV 554
           IRQAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+ ER+ MP +K+
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 497

Query: 555 RKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPR 614
           RKV+KIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +LKE    VL+ LT R
Sbjct: 498 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAR 557

Query: 615 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 673
           E +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  +RSFLD+
Sbjct: 558 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE 616