Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  527 bits (1358), Expect = e-154
 Identities = 308/655 (47%), Positives = 410/655 (62%), Gaps = 52/655 (7%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENE-DVGED 83
           +  IK+L+ R +++GY+T  ++N+ LP+D    +Q+ED++  ++DMG+NV E+  D    
Sbjct: 8   QSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADAL 67

Query: 84  EQPEDDTPDEVDSSDKDDEPFEIAKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAK 143
              E DT    D +  ++    +A  +  + RT DPVRMY+REMG VELL+REGEI IAK
Sbjct: 68  LLAEADT----DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAK 123

Query: 144 RIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREIL----DLDAMLSKGPSAEQV 199
           RIE G   ++  +   P T + I+G  D +     +L ++L    D D  ++       +
Sbjct: 124 RIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEEVPI 183

Query: 200 EGAEDDDSGEISEKTAGASFKEEEEPEEASADEDDELTERRAPRISDEEEEDNTLSLAQM 259
            GA+           A A+ +E ++ EE S   DDE           EE E     +   
Sbjct: 184 PGAK-----------AAAAKEESDDDEEESESGDDE-----------EEAESGPDPVV-- 219

Query: 260 EETLKPQALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEVES 319
                  A +RF  ++   +  SKV ++              + K+  +  + L      
Sbjct: 220 -------AAQRFGAVSDQLQATSKVLKKN-----------GRNHKESIEALQALADLFMP 261

Query: 320 VQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAERH-KVNRKDFLDRYMGHELDESFIAS 378
           ++    + E LV+++     RL      +++L  R  ++ R DFL  +  +E D+++   
Sbjct: 262 IKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARMPRADFLRMFPSNETDQTWSGD 321

Query: 379 VEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIAKKE 438
           + K + KWAA    + AA+   + ++ ++  +TG+ + E + I   +  GE +AR AKKE
Sbjct: 322 LAKRNTKWAAALGEKNAAIVACQQKLIDLETETGLTVAEIKEINRRMSIGEAKARRAKKE 381

Query: 439 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 498
           MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
Sbjct: 382 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 441

Query: 499 ITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVM 558
           ITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+ ER+ MP +K+RKV+
Sbjct: 442 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVL 501

Query: 559 KIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERV 618
           KIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +LKE    VL+ LT RE +V
Sbjct: 502 KIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKV 561

Query: 619 LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 673
           LRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  +RSFLD+
Sbjct: 562 LRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE 616