Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  501 bits (1290), Expect = e-146
 Identities = 296/657 (45%), Positives = 396/657 (60%), Gaps = 69/657 (10%)

Query: 28  IKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDEQPE 87
           +K L+   K RGY+T  ++N+ LP      + +E V+S L+DMGV V E     E     
Sbjct: 137 LKTLIKLGKTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLLN 196

Query: 88  DDTPDEVDSSDKDDEPFEIAKKKETVD----RTDDPVRMYLREMGAVELLSREGEIAIAK 143
           +  P      + ++E         TVD    RT DPVRMY+REMG VELL+REGEI IAK
Sbjct: 197 NTGPTAATEEEAEEEA---EAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 253

Query: 144 RIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREILDLDAMLSKGPSAEQVEGAE 203
           RIE G + M+  + ESP T   I+  ++ + EG + +  ++D                  
Sbjct: 254 RIEGGLNDMMAAISESPATIAEILVMAEDIREGKVVISTVVD------------------ 295

Query: 204 DDDSGEISEKTAGASFKEEEEPEEASADED-DELTERRAPRISDEEEEDNTLSLAQMEET 262
                          F + +E ++  A+ED D+  E       D++ +  + +L +  E 
Sbjct: 296 --------------GFADADEADDYVAEEDFDDYDE-----ADDDDGKGGSKALTRKLEE 336

Query: 263 LKPQALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEVESVQF 322
           LK +AL RF N+ ++++K  K+  +  +     G         Y K +  +T  + S++F
Sbjct: 337 LKREALSRFDNMRTLFEKLHKIYDK--EGYGTPG---------YLKTQTSITETLMSIRF 385

Query: 323 HQAKIEYL-------VDQLYSFNRRLTALGGQMLRLAERHKVNRKDFLDRYMGHELDESF 375
               IE L       VD +    R L  +      + ++  + ++ F+  +  + L+  +
Sbjct: 386 TAKAIEKLCGTMRSQVDDVRKKERELRRI------IVDKCGMPQETFIKEFPPNLLNLKW 439

Query: 376 IASVEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIA 435
           +       K W+         V  ++  +  I     + LT  + I   + +GE  +R A
Sbjct: 440 VEKQAAAGKPWSVVIERNIPPVQELQQGLINIQASVVVPLTHLKDIHKRMNQGESTSRDA 499

Query: 436 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 495
           KKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 500 KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 559

Query: 496 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR 555
           RQAITRSIADQARTIRIPVHMIETINK+ R SRQ L E G EP    +AE++ MP +K+R
Sbjct: 560 RQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEMPEDKIR 619

Query: 556 KVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPRE 615
           K+MKIAKEPIS+ETPIGD++DSHLGDFIED+    P++AA+QA L+E V  +L SLTPRE
Sbjct: 620 KIMKIAKEPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPRE 679

Query: 616 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD 672
            +VLRMRFGI M+TDHTLEEVG+QF VTRERIRQIE+KA+RKLKHPSRS K+RSF+D
Sbjct: 680 AKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFID 736