Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  527 bits (1357), Expect = e-154
 Identities = 307/653 (47%), Positives = 411/653 (62%), Gaps = 49/653 (7%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDE 84
           +  +K LV R K++GY+T  ++N+ LP+D   +DQIED++  ++DMG+ V+E     +D 
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 85  QPEDDTPDEVDSSDKDDEPFE---IAKKKETVDRTDDPVRMYLREMGAVELLSREGEIAI 141
              ++T     S+D+D E      ++  +  + RT DPVRMY+REMG VELL+REGEI I
Sbjct: 66  LLAENTT----STDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 121

Query: 142 AKRIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREILDLDAMLSKGPSAEQVEG 201
           AKRIE G + +   + E P     ++   D +     +L ++               + G
Sbjct: 122 AKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL---------------ITG 166

Query: 202 AEDDDSGEISEKTAGASFKEEEEPEEASADEDDELTERRAPRISDEEEEDNTLSLAQMEE 261
             D ++              EEE    +     EL++       DE+EED     A  + 
Sbjct: 167 FVDPNA--------------EEEMAPTATHVGSELSQEDLDDDEDEDEEDGDDDAADDDN 212

Query: 262 TLKPQ-ALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEVESV 320
           ++ P+ A E+FA + + Y           D + A G   AA +++  KL E      +  
Sbjct: 213 SIDPELAREKFAELRAQYVVTR-------DTIKAKGRSHAAAQEEILKLSEVF----KQF 261

Query: 321 QFHQAKIEYLVDQLYSFNRRLTALGGQMLRLA-ERHKVNRKDFLDRYMGHELDESFIASV 379
           +    + +YLV+ +     R+      +++L  E+ K+ +K+F+  + G+E  E++  + 
Sbjct: 262 RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSETWFNAA 321

Query: 380 EKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIAKKEM 439
             ++K W+    +    V R   ++ +I ++TG+ + + + I   +  GE +AR AKKEM
Sbjct: 322 IAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEM 381

Query: 440 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 499
           VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
Sbjct: 382 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 441

Query: 500 TRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMK 559
           TRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+AER+ MP +K+RKV K
Sbjct: 442 TRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVPK 501

Query: 560 IAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVL 619
           IAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +L+     VLA LT RE +VL
Sbjct: 502 IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVL 561

Query: 620 RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD 672
           RMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD
Sbjct: 562 RMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 614