Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 613 a.a., RNA polymerase, sigma 70 (sigma D) factor from Escherichia coli BL21

 Score =  527 bits (1357), Expect = e-154
 Identities = 308/655 (47%), Positives = 414/655 (63%), Gaps = 55/655 (8%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDE 84
           +  +K LV R K++GY+T  ++N+ LP+D   +DQIED++  ++DMG+ V+E     +D 
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 85  QPEDDTPDEVDSSDKDDEPFEIAKKKET-VDRTDDPVRMYLREMGAVELLSREGEIAIAK 143
              ++T DE    D  +   ++    E+ + RT DPVRMY+REMG VELL+REGEI IAK
Sbjct: 66  MLAENTADE----DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121

Query: 144 RIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREIL----DLDAMLSKGPSAEQV 199
           RIE G + +   + E P     ++   D +     +L +++    D +A     P+A  V
Sbjct: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181

Query: 200 EGAEDDDSGEISEKTAGASFKEEEEPEEASADEDDELTERRAPRISDEEEEDNTLSLAQM 259
                           G+   +E+        +DDE          DE+EED     A  
Sbjct: 182 ----------------GSELSQEDL-------DDDE----------DEDEEDGDDDSADD 208

Query: 260 EETLKPQ-ALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEVE 318
           + ++ P+ A E+FA + + Y           D + A G   A  +++  KL E      +
Sbjct: 209 DNSIDPELAREKFAELRAQYVVTR-------DTIKAKGRSHATAQEEILKLSEVF----K 257

Query: 319 SVQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLA-ERHKVNRKDFLDRYMGHELDESFIA 377
             +    + +YLV+ +     R+      +++L  E+ K+ +K+F+  + G+E  +++  
Sbjct: 258 QFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFN 317

Query: 378 SVEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIAKK 437
           +   ++K W+    +    V R   ++ +I ++TG+ + + + I   +  GE +AR AKK
Sbjct: 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 377

Query: 438 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 497
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437

Query: 498 AITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKV 557
           AITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+AER+ MP +K+RKV
Sbjct: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497

Query: 558 MKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREER 617
           +KIAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +L+     VLA LT RE +
Sbjct: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557

Query: 618 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD 672
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD
Sbjct: 558 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612