Pairwise Alignments

Query, 339 a.a., Topoisomerase IB from Sphingomonas koreensis DSMZ 15582

Subject, 345 a.a., DNA topoisomerase from Pseudomonas simiae WCS417

 Score =  289 bits (739), Expect = 8e-83
 Identities = 149/335 (44%), Positives = 207/335 (61%), Gaps = 11/335 (3%)

Query: 5   LRYCDDSRPGITRRKLSQGWGYWDTDGHRITNRDEIDRLNAVGLPPAYTDAWYCPHPNGH 64
           L Y DD++PGI R+ +   + Y+D  G RIT+ +EI RLNA+ +PPAYTD W C  P GH
Sbjct: 10  LHYVDDTQPGIRRKTVRGRFQYFDPQGVRITDAEEIKRLNALAVPPAYTDVWICADPRGH 69

Query: 65  LQATGIDARGRKQYRYHPEFRAAQEAAKYDRCAAFGHLLPGLRARIEADLRKRSLSKERA 124
           LQATG DARGRKQYRYHP +R  +++ KY R   FG+ LP LR ++EA + +   ++++ 
Sbjct: 70  LQATGRDARGRKQYRYHPRWREVRDSDKYSRLQEFGNALPKLRKQLEAKIAEPGFTRKKV 129

Query: 125 VAAVVRLLDRGHVRVGNEGYAKANKSFGATTLRKRHAKLNGTSLKLQYRAKSGKLRTLTL 184
           +A VV LLD   +RVGN  YA+ NKS+G TTLR RH  + G+ ++ Q+R KSG    +++
Sbjct: 130 LATVVMLLDATLIRVGNTQYARDNKSYGLTTLRTRHVDVKGSEIQFQFRGKSGVEHQISV 189

Query: 185 TDTSLRSFVKRCQDLPGQHLFGWLDGAGEAHPVTSTDVNDYIRDAMGDDFTAKHFRTWGA 244
            D  L + VKRC +LPGQ+LF +LD  GE H V+S DVNDY+    G DFTAK +RTW  
Sbjct: 190 KDRRLATVVKRCLELPGQNLFQYLDEDGERHTVSSHDVNDYLHSLTGADFTAKDYRTWAG 249

Query: 245 SVIAFEAL------VDAEAPIGLNTMLEPVTEALGNTPAIARKSYVHPQLIELAKDRDAQ 298
           + +A   L       +++A   +  M++ V + LGNTPA+ RK Y+HP ++E     +  
Sbjct: 250 TAMALAVLRELEWQPESDAKRHVVAMVKDVAKQLGNTPAVCRKCYIHPAVLEHFSLGELS 309

Query: 299 RAFRDALTLPRATRHLSRAERGLIAFLEHNAMAAP 333
           +     L  PR  + L   E  L  FLE  A   P
Sbjct: 310 K-----LPKPRLRKGLKAEEVALAMFLEQLAADLP 339