Pairwise Alignments

Query, 339 a.a., Topoisomerase IB from Sphingomonas koreensis DSMZ 15582

Subject, 340 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  271 bits (694), Expect = 1e-77
 Identities = 130/292 (44%), Positives = 187/292 (64%), Gaps = 6/292 (2%)

Query: 5   LRYCDDSRPGITRRKLSQGWGYWDTDGHRITNRDEIDRLNAVGLPPAYTDAWYCPHPNGH 64
           L Y DDS+PG+TRR+    + Y D DG R+ + + + R+ A+ +PPAYTD W C  P GH
Sbjct: 10  LHYVDDSQPGLTRRRWRDRFIYLDADGQRVRDSETLARIAALVIPPAYTDVWICADPQGH 69

Query: 65  LQATGIDARGRKQYRYHPEFRAAQEAAKYDRCAAFGHLLPGLRARIEADLRKRSLSKERA 124
           LQATG DARGRKQYRYH ++R  ++  KY R  AF   LP LR ++EA L +  L +E+ 
Sbjct: 70  LQATGRDARGRKQYRYHAQWRELRDQHKYGRMLAFAQALPKLRTQLEAHLARPGLDREKV 129

Query: 125 VAAVVRLLDRGHVRVGNEGYAKANKSFGATTLRKRHAKLNGTSLKLQYRAKSGKLRTLTL 184
           +A VV LLD   +R+GN+ Y + N+S+G TTLR RH ++ G++++ Q+R K G    +TL
Sbjct: 130 MALVVSLLDHTLIRIGNQRYLRDNRSYGLTTLRNRHVQVKGSTIRFQFRGKRGVEHNVTL 189

Query: 185 TDTSLRSFVKRCQDLPGQHLFGWLDGAGEAHPVTSTDVNDYIRDAMGDDFTAKHFRTWGA 244
            D  L + +KRC +LPGQ LF +LD  G+ H V S++VN +++   G DFTAK +RTW  
Sbjct: 190 NDRRLANLLKRCMELPGQALFQYLDEDGQRHSVGSSEVNQFLQQLTGADFTAKDYRTWAG 249

Query: 245 SVIAFEAL------VDAEAPIGLNTMLEPVTEALGNTPAIARKSYVHPQLIE 290
           S +A   L       ++EA   +  ++  V   LGNTPA+ R+ Y+HP ++E
Sbjct: 250 SSLALNLLKPLAWEPESEAKRQVAAIVRQVATRLGNTPAVCRRCYIHPAVLE 301