Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  160 bits (406), Expect = 7e-44
 Identities = 112/372 (30%), Positives = 194/372 (52%), Gaps = 24/372 (6%)

Query: 7   LELVKRRLLGDSERTQAPLVRSRVDEIYLKYGIAPDQAAVVERELLSAGVLIDEEDESDQ 66
           ++LV ++  G  ER ++ L R R  E  +       Q  V +  +  A  L         
Sbjct: 262 IKLVPKQFEGLVERVRSALERLRAQERAIM------QLCVRDARMPRADFL---RQFPGN 312

Query: 67  EHEEGATATPSTTSPTFADALSHLMHQAKKLPLLSRQDEQRLGEAIQRGLAVTQTSEMPL 126
           E +E  T   +     +A+A+  L       P + R  ++      + GL + +  +  +
Sbjct: 313 EVDESWTDALAKGKAKYAEAIGRLQ------PDIIRCQQKLTALETETGLTIAEIKD--I 364

Query: 127 DGHTARLVAKAKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFD 186
           +   +   AKA+ A++ ++ +N+RLV+ +  +   R  +   DL+Q G IGLM+A +KF+
Sbjct: 365 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFE 423

Query: 187 PDVGTRFSTYATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHV 246
              G +FSTYATWWIRQA+TR I +    IR+PVH+I +I++  R  RQ+    GR    
Sbjct: 424 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 483

Query: 247 KLIAESLGWTDDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMAD-TADRPDEAVEL 305
           + + E +   +D   ++  +++   +S++ P+G D+   S LGD + D T   P +   +
Sbjct: 484 EELGERMEMPEDKIRKVLKIAK-EPISMETPIGDDE--DSHLGDFIEDSTMQSPIDVATV 540

Query: 306 LDIRAAVRSLVDDIQDERARDIVKRRFGFD-GPDETLQEIGDRYEVTRERIRQVEAKTLD 364
             ++ A R ++  +    A+ +++ RFG D   D TL+E+G +++VTRERIRQ+EAK L 
Sbjct: 541 ESLKEATRDVLSGLTAREAK-VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 599

Query: 365 KLEKRAIAKGLR 376
           KL     ++ LR
Sbjct: 600 KLRHPTRSEHLR 611